KEGG   PATHWAY: obb04137
Entry
obb04137                    Pathway                                
Name
Mitophagy - animal - Osmia bicornis bicornis (red mason bee)
Description
Mitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process called reactive oxidative species (ROS) lead to mitochondrial dysfunction. If the damage is too excessive to be repaired, such mitochondria are selectively recognized and targeted for degradation by a specific mode of autophagy, termed mitophagy. The loss of the mitochondrial membrane potential can induce mitophagy, involving the kinase PINK1 and the E3 ligase Parkin. PINK1 serves as the sensor for the mitochondrial depolarization and recruits Parkin, followed by ubiquitin-dependent recruitment of mitophagy receptors. There are also several PINK1/Parkin-independent mitophagy pathways, in which a group of LIR-containing receptors are required in response to different stimuli. Mitophagy contributes to the maintenance of a healthy mitochondrial network and the prevention of programmed cell death.
Class
Cellular Processes; Transport and catabolism
Pathway map
obb04137  Mitophagy - animal
obb04137

Other DBs
GO: 0000422
Organism
Osmia bicornis bicornis (red mason bee) [GN:obb]
Gene
114872188  serine/threonine-protein kinase PINK1, mitochondrial [KO:K05688] [EC:2.7.11.1]
114874485  mitochondrial import receptor subunit TOM40 homolog 1 [KO:K11518]
114877875  mitochondrial import receptor subunit TOM40 homolog 1-like [KO:K11518]
114883209  mitochondrial import receptor subunit TOM20 homolog [KO:K17770]
114879582  mitochondrial import receptor subunit TOM70 [KO:K17768]
114876354  E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
114875960  E3 ubiquitin-protein ligase MARCH5-like isoform X1 [KO:K10660] [EC:2.3.2.27]
114876995  E3 ubiquitin-protein ligase SMURF1 [KO:K04678] [EC:2.3.2.26]
114879730  E3 ubiquitin-protein ligase AMFR-like [KO:K10636] [EC:2.3.2.36]
114871395  mitochondrial E3 ubiquitin protein ligase 1 [KO:K15688] [EC:2.3.2.27]
114875168  E3 ubiquitin-protein ligase HUWE1 [KO:K10592] [EC:2.3.2.26]
114871829  E3 ubiquitin-protein ligase SIAH1-like [KO:K04506] [EC:2.3.2.27]
114879591  potential E3 ubiquitin-protein ligase ariadne-1 [KO:K11968] [EC:2.3.2.31]
114877724  transmembrane GTPase Marf [KO:K06030] [EC:3.6.5.-]
114878856  mitochondrial Rho GTPase isoform X1 [KO:K07870] [EC:3.6.5.-]
114876086  ubiquitin-60S ribosomal protein L40 [KO:K02927]
114877272  ubiquitin-40S ribosomal protein S27a [KO:K02977]
114879432  polyubiquitin-C [KO:K08770]
114872501  calcium-binding and coiled-coil domain-containing protein 2-like [KO:K21347]
114875455  sequestosome-1 [KO:K14381]
114871063  inhibitor of nuclear factor kappa-B kinase subunit epsilon [KO:K05410] [EC:2.7.11.10]
114874187  gamma-aminobutyric acid receptor-associated protein [KO:K08341]
114870972  microtubule-associated proteins 1A/1B light chain 3A-like [KO:K10435]
114875330  beclin-1-like protein isoform X1 [KO:K08334]
114873699  ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [KO:K11839] [EC:3.4.19.12]
114876926  ubiquitin carboxyl-terminal hydrolase 30 homolog [KO:K11851] [EC:3.4.19.12]
114879603  uncharacterized protein LOC114879603 [KO:K04570]
114874735  serine/threonine-protein phosphatase PGAM5, mitochondrial [KO:K15637] [EC:3.1.3.16]
114875288  serine/threonine-protein phosphatase PGAM5, mitochondrial-like [KO:K15637] [EC:3.1.3.16]
114876580  casein kinase II subunit alpha isoform X1 [KO:K03097] [EC:2.7.11.1]
114877575  casein kinase II subunit beta isoform X1 [KO:K03115]
114878262  tyrosine-protein kinase Src64B isoform X1 [KO:K05704] [EC:2.7.10.2]
114874922  FUN14 domain-containing protein 1A-like isoform X1 [KO:K17986]
114877426  BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 [KO:K15464]
114875780  peptidyl-prolyl cis-trans isomerase FKBP8 [KO:K09574] [EC:5.2.1.8]
114874124  sorting and assembly machinery component 50 homolog B [KO:K07277]
114877265  prohibitin-2 [KO:K17081]
114873056  metaxin-1 isoform X1 [KO:K17776]
114876320  metaxin-2-like isoform X1 [KO:K17776]
114871046  eukaryotic translation initiation factor 2-alpha kinase isoform X1 [KO:K08860] [EC:2.7.11.1]
114875281  eukaryotic translation initiation factor 2 subunit 1 [KO:K03237]
114874933  activating transcription factor of chaperone isoform X1 [KO:K04374]
114877625  stress-activated protein kinase JNK [KO:K04440] [EC:2.7.11.24]
114875381  transcription factor AP-1 [KO:K04448]
114871890  ras-like protein 1 [KO:K07827]
114877070  ras-related protein M-Ras-like isoform X1 [KO:K07831]
114879496  ras-like protein 2 [KO:K07830]
114872902  protein similar-like [KO:K08268]
114872156  forkhead box protein O-like isoform X1 [KO:K09408]
114871845  microphthalmia-associated transcription factor isoform X1 [KO:K09455]
114873879  rab5 GDP/GTP exchange factor isoform X1 [KO:K20131]
114876164  ras-related protein Rab-5C [KO:K07889]
114881699  vacuolar fusion protein MON1 homolog A [KO:K20195]
114878011  vacuolar fusion protein CCZ1 homolog [KO:K27045]
114876987  ras-related protein rab7 [KO:K07897]
114878393  TBC1 domain family member 15 isoform X1 [KO:K20168]
114871887  mitochondrial fission 1 protein [KO:K17969]
114879144  autophagy-related protein 9A isoform X1 [KO:K17907]
114876654  dynamin-like 120 kDa protein, mitochondrial [KO:K17079] [EC:3.6.5.5]
114875212  transitional endoplasmic reticulum ATPase TER94 isoform X1 [KO:K13525]
Compound
C00035  GDP
C00044  GTP
Reference
  Authors
Pickrell AM, Youle RJ
  Title
The roles of PINK1, parkin, and mitochondrial fidelity in Parkinson's disease.
  Journal
Neuron 85:257-73 (2015)
DOI:10.1016/j.neuron.2014.12.007
Reference
  Authors
Durcan TM, Fon EA
  Title
The three 'P's of mitophagy: PARKIN, PINK1, and post-translational modifications.
  Journal
Genes Dev 29:989-99 (2015)
DOI:10.1101/gad.262758.115
Reference
  Authors
Shirihai OS, Song M, Dorn GW 2nd
  Title
How mitochondrial dynamism orchestrates mitophagy.
  Journal
Circ Res 116:1835-49 (2015)
DOI:10.1161/CIRCRESAHA.116.306374
Reference
  Authors
Hamacher-Brady A, Brady NR
  Title
Mitophagy programs: mechanisms and physiological implications of mitochondrial targeting by autophagy.
  Journal
Cell Mol Life Sci 73:775-95 (2016)
DOI:10.1007/s00018-015-2087-8
Reference
  Authors
Yamano K, Matsuda N, Tanaka K
  Title
The ubiquitin signal and autophagy: an orchestrated dance leading to mitochondrial degradation.
  Journal
EMBO Rep 17:300-16 (2016)
DOI:10.15252/embr.201541486
Reference
  Authors
Yamaguchi O, Murakawa T, Nishida K, Otsu K
  Title
Receptor-mediated mitophagy.
  Journal
J Mol Cell Cardiol 95:50-6 (2016)
DOI:10.1016/j.yjmcc.2016.03.010
Reference
  Authors
Roberts RF, Tang MY, Fon EA, Durcan TM
  Title
Defending the mitochondria: The pathways of mitophagy and mitochondrial-derived vesicles.
  Journal
Int J Biochem Cell Biol 79:427-436 (2016)
DOI:10.1016/j.biocel.2016.07.020
Reference
  Authors
Arena G, Valente EM
  Title
PINK1 in the limelight: multiple functions of an eclectic protein in human health and disease.
  Journal
J Pathol 241:251-263 (2017)
DOI:10.1002/path.4815
Related
pathway
obb04140  Autophagy - animal
KO pathway
ko04137   
LinkDB

DBGET integrated database retrieval system