KEGG   PATHWAY: omc03030
Entry
omc03030                    Pathway                                
Name
DNA replication - Onychostoma macrolepis
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
omc03030  DNA replication
omc03030

Organism
Onychostoma macrolepis [GN:omc]
Gene
131539106  ssbp1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
131524071  ribonuclease H-like [KO:K03469] [EC:3.1.26.4]
131526852  rnaseh1; ribonuclease H1 isoform X1 [KO:K03469] [EC:3.1.26.4]
131520307  rpa1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
131548716  pcna; proliferating cell nuclear antigen [KO:K04802]
131552811  dna2; DNA replication ATP-dependent helicase/nuclease DNA2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
131533531  fen1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
131529523  zgc:110269; probable flap endonuclease 1 homolog [KO:K04799] [EC:3.1.-.-]
131530647  lig1; DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
131533457  pola1; DNA polymerase alpha catalytic subunit isoform X1 [KO:K02320] [EC:2.7.7.7]
131545514  pola2; DNA polymerase alpha subunit B [KO:K02321]
131532606  prim1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
131551827  prim2; DNA primase large subunit [KO:K02685]
131536397  pold1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
131545817  pold2; DNA polymerase delta subunit 2 [KO:K02328]
131529543  pold3; DNA polymerase delta subunit 3 [KO:K03504]
131541790  pold4; DNA polymerase delta subunit 4 [KO:K03505]
131540472  pole; LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
131523539  pole2; DNA polymerase epsilon subunit 2 isoform X1 [KO:K02325] [EC:2.7.7.7]
131540619  pole3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
131549274  pole4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
131529789  mcm2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
131527698  mcm3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
131527743  LOW QUALITY PROTEIN: maternal DNA replication licensing factor mcm3-like [KO:K02541] [EC:5.6.2.3]
131527745  LOW QUALITY PROTEIN: maternal DNA replication licensing factor mcm3-like [KO:K02541] [EC:5.6.2.3]
131532949  mcm4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
131536624  mcm5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
131524628  mcm6l; MCM6 minichromosome maintenance deficient 6, like [KO:K02542] [EC:5.6.2.3]
131542304  mcm6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
131552917  mcm7; DNA replication licensing factor MCM7 [KO:K02210] [EC:5.6.2.3]
131521297  rpa2; replication protein A 32 kDa subunit isoform X1 [KO:K10739]
131525372  rpa3; replication protein A 14 kDa subunit [KO:K10740]
131548931  rfc1; replication factor C subunit 1 [KO:K10754]
131549388  rfc4; replication factor C subunit 4 [KO:K10755]
131529406  rfc2; replication factor C subunit 2 [KO:K10755]
131540697  rfc5; replication factor C subunit 5 [KO:K10756]
131548297  rfc3; replication factor C subunit 3 [KO:K10756]
131545220  rnaseh2a; ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
131547561  rnaseh2b; ribonuclease H2 subunit B [KO:K10744]
131553897  rnaseh2c; ribonuclease H2 subunit C [KO:K10745]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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