KEGG   PATHWAY: pagg00030
Entry
pagg00030                   Pathway                                
Name
Pentose phosphate pathway - Pantoea vagans FDAARGOS_160
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pagg00030  Pentose phosphate pathway
pagg00030

Module
pagg_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:pagg00030]
pagg_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:pagg00030]
pagg_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:pagg00030]
pagg_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:pagg00030]
pagg_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:pagg00030]
pagg_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:pagg00030]
Other DBs
GO: 0006098
Organism
Pantoea vagans FDAARGOS_160 [GN:pagg]
Gene
AL522_05615  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
AL522_15410  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
AL522_10255  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
AL522_16075  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
AL522_16700  NADP-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
AL522_21820  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
AL522_18170  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
AL522_12245  transketolase [KO:K00615] [EC:2.2.1.1]
AL522_19890  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
AL522_18165  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
AL522_07315  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
AL522_19850  ribose-5-phosphate isomerase RpiA [KO:K01807] [EC:5.3.1.6]
AL522_03635  phosphoketolase family protein [KO:K01621] [EC:4.1.2.9 4.1.2.22]
AL522_20170  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
AL522_04345  ribokinase [KO:K00852] [EC:2.7.1.15]
AL522_06780  ribokinase [KO:K00852] [EC:2.7.1.15]
AL522_20160  deoB; phosphopentomutase [KO:K01839] [EC:5.4.2.7]
AL522_09970  alpha-D-glucose phosphate-specific phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
AL522_16165  ribose 1,5-bisphosphokinase [KO:K05774] [EC:2.7.4.23]
AL522_12605  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
AL522_15405  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
AL522_00535  3-oxoacyl-ACP reductase [KO:K00034] [EC:1.1.1.47]
AL522_06010  glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase [KO:K00117] [EC:1.1.5.2]
AL522_13910  membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family [KO:K00117] [EC:1.1.5.2]
AL522_12120  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
AL522_05940  GMC family oxidoreductase [KO:K06151] [EC:1.1.99.3]
AL522_06820  GMC family oxidoreductase [KO:K06151] [EC:1.1.99.3]
AL522_05935  gluconate 2-dehydrogenase subunit 3 family protein [KO:K06152] [EC:1.1.99.3]
AL522_06815  gluconate 2-dehydrogenase subunit 3 family protein [KO:K06152] [EC:1.1.99.3]
AL522_04610  glyoxylate/hydroxypyruvate reductase GhrB [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
AL522_22090  gluconokinase [KO:K00851] [EC:2.7.1.12]
AL522_04600  sugar kinase [KO:K00874] [EC:2.7.1.45]
AL522_05000  sugar kinase [KO:K00874] [EC:2.7.1.45]
AL522_13730  ketose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
AL522_19875  class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
AL522_20970  class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
AL522_03905  glpX; fructose-bisphosphatase class II [KO:K02446] [EC:3.1.3.11]
AL522_13715  permease [KO:K00850] [EC:2.7.1.11]
AL522_03945  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
pagg00010  Glycolysis / Gluconeogenesis
pagg00040  Pentose and glucuronate interconversions
pagg00052  Galactose metabolism
pagg00230  Purine metabolism
pagg00240  Pyrimidine metabolism
pagg00340  Histidine metabolism
pagg00630  Glyoxylate and dicarboxylate metabolism
pagg00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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