KEGG   PATHWAY: palp03030
Entry
palp03030                   Pathway                                
Name
DNA replication - Paracoccus alcaliphilus
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
palp03030  DNA replication
palp03030

Organism
Paracoccus alcaliphilus [GN:palp]
Gene
JHW40_01975  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
JHW40_03630  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
JHW40_10870  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
JHW40_10510  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
JHW40_07690  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
JHW40_03465  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
JHW40_17625  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
JHW40_00010  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
JHW40_07420  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
JHW40_11295  DNA primase [KO:K02316] [EC:2.7.7.101]
JHW40_10245  ssb; single-stranded DNA-binding protein [KO:K03111]
JHW40_13815  single-stranded DNA-binding protein [KO:K03111]
JHW40_06745  rnhA; ribonuclease HI [KO:K03469] [EC:3.1.26.4]
JHW40_00250  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
JHW40_08965  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
JHW40_11730  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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