KEGG   PATHWAY: palv02025
Entry
palv02025                   Pathway                                
Name
Biofilm formation - Pseudomonas aeruginosa - Pseudomonas alvandae
Description
Surface colonization and subsequent biofilm formation and development provide numerous advantages to microorganisms. The main key actors relevant in the regulation of biofilm formation by Pseudomonas aeruginosa include cAMP/Vfr signaling, quorum sensing (QS) systems, Gac/Rsm pathway, and c-di-GMP signaling. cAMP/Vfr signaling regulates the transcription of hundreds of genes encoding diverse virulence factors, including the type 2 secretion system and type 3 secretion system and their associated toxins, type IV pili, and flagella. It is demonstrated that the accumulation of cAMP inhibits the attachment phase of biofilm formation. The QS systems are arranged hierarchically with the las system positively regulating both the rhl and PQS systems. These three QS systems are involved in the regulation of virulence factor production, biofilm maturation, and motility phenotypes. GacS/GacA two-component system is promoting the expression of two small regulatory RNAs, RsmY and RsmZ, which sequester the translational repressor RsmA. Titration of RsmA induces the production of sessile and biofilm determinants, whereas free RsmA leads to a planktonic and more virulent lifestyle. c-di-GMP is a ubiquitous bacterial second messenger. Synthesis and degradation of c-di-GMP is facilitated by diguanylate cyclases (DGC) and phosphodiesterases (PDE). High intracellular levels of c-di-GMP evoke the processes leading to the production of biofilm matrix, while a decrease in its level causes an increase in cell motility and transition into the planktonic forms of growth.
Class
Cellular Processes; Cellular community - prokaryotes
Pathway map
palv02025  Biofilm formation - Pseudomonas aeruginosa
palv02025

Organism
Pseudomonas alvandae [GN:palv]
Gene
KSS97_27255  type IV pili methyl-accepting chemotaxis transducer N-terminal domain-containing protein [KO:K02660]
KSS97_27260  chemotaxis protein CheW [KO:K02659]
KSS97_27250  Hpt domain-containing protein [KO:K06596]
KSS97_27245  chemotaxis protein CheW [KO:K06598]
KSS97_27265  pilH; twitching motility response regulator PilH [KO:K02658]
KSS97_27270  response regulator [KO:K02657]
KSS97_03695  cpdA; 3',5'-cyclic-AMP phosphodiesterase [KO:K03651] [EC:3.1.4.53]
KSS97_26315  crp; cAMP-activated global transcriptional regulator CRP [KO:K10914]
KSS97_01890  Crp/Fnr family transcriptional regulator [KO:K10914]
KSS97_21640  cyclic nucleotide-binding domain-containing protein [KO:K10914]
KSS97_21145  sigma-54 dependent transcriptional regulator [KO:K10941]
KSS97_17860  GNAT family N-acetyltransferase [KO:K13061] [EC:2.3.1.184]
KSS97_26340  trpE; anthranilate synthase component I [KO:K01657] [EC:4.1.3.27]
KSS97_26335  aminodeoxychorismate/anthranilate synthase component II [KO:K01658] [EC:4.1.3.27]
KSS97_07970  response regulator [KO:K07678] [EC:2.7.13.3]
KSS97_25290  response regulator [KO:K20971]
KSS97_23960  response regulator [KO:K20971]
KSS97_04270  response regulator [KO:K20972]
KSS97_18425  uvrY; UvrY/SirA/GacA family response regulator transcription factor [KO:K07689]
KSS97_15330  response regulator transcription factor [KO:K07689]
KSS97_19375  csrA; carbon storage regulator CsrA [KO:K03563]
KSS97_20885  csrA; carbon storage regulator CsrA [KO:K03563]
KSS97_07750  csrA; carbon storage regulator CsrA [KO:K03563]
KSS97_20335  response regulator [KO:K20973] [EC:2.7.13.3]
KSS97_08700  response regulator [KO:K20974] [EC:2.7.13.3]
KSS97_15370  PAS-domain containing protein [KO:K20975] [EC:2.7.13.3]
KSS97_21090  Hpt domain-containing protein [KO:K20976]
KSS97_21095  SpoIIE family protein phosphatase [KO:K20977]
KSS97_21100  STAS domain-containing protein [KO:K20978]
KSS97_07820  flgM; flagellar biosynthesis anti-sigma factor FlgM [KO:K02398]
KSS97_21025  RNA polymerase sigma factor FliA [KO:K02405]
KSS97_00260  protein kinase [KO:K11912] [EC:2.7.11.1]
KSS97_00265  protein phosphatase 2C domain-containing protein [KO:K11915] [EC:3.1.3.16]
KSS97_01565  serine/threonine-protein phosphatase [KO:K11915] [EC:3.1.3.16]
KSS97_00270  tagF; type VI secretion system-associated protein TagF [KO:K11890]
KSS97_00275  tssM; type VI secretion system membrane subunit TssM [KO:K11891]
KSS97_01560  tssM; type VI secretion system membrane subunit TssM [KO:K11891]
KSS97_12225  type VI secretion system protein ImpL [KO:K11891]
KSS97_13730  type VI secretion protein VasK [KO:K11891]
KSS97_17520  tssM; type VI secretion system membrane subunit TssM [KO:K11891]
KSS97_00285  tssK; type VI secretion system baseplate subunit TssK [KO:K11893]
KSS97_01550  tssK; type VI secretion system baseplate subunit TssK [KO:K11893]
KSS97_12215  tssK; type VI secretion system baseplate subunit TssK [KO:K11893]
KSS97_13670  tssK; type VI secretion system baseplate subunit TssK [KO:K11893]
KSS97_17565  tssK; type VI secretion system baseplate subunit TssK [KO:K11893]
KSS97_00295  tagH; type VI secretion system-associated FHA domain protein TagH [KO:K11913]
KSS97_00300  tssA; type VI secretion system protein TssA [KO:K11902]
KSS97_12230  tssA; type VI secretion system protein TssA [KO:K11902]
KSS97_00305  tssB; type VI secretion system contractile sheath small subunit [KO:K11901]
KSS97_01500  tssB; type VI secretion system contractile sheath small subunit [KO:K11901]
KSS97_12205  tssB; type VI secretion system contractile sheath small subunit [KO:K11901]
KSS97_13660  tssB; type VI secretion system contractile sheath small subunit [KO:K11901]
KSS97_17535  tssB; type VI secretion system contractile sheath small subunit [KO:K11901]
KSS97_00310  tssC; type VI secretion system contractile sheath large subunit [KO:K11900]
KSS97_01505  tssC; type VI secretion system contractile sheath large subunit [KO:K11900]
KSS97_12200  tssC; type VI secretion system contractile sheath large subunit [KO:K11900]
KSS97_13665  tssC; type VI secretion system contractile sheath large subunit [KO:K11900]
KSS97_17540  tssC; type VI secretion system contractile sheath large subunit [KO:K11900]
KSS97_19475  Hcp family type VI secretion system effector [KO:K11903]
KSS97_00315  type VI secretion system tube protein Hcp [KO:K11903]
KSS97_12195  type VI secretion system tube protein Hcp [KO:K11903]
KSS97_13685  Hcp family type VI secretion system effector [KO:K11903]
KSS97_17575  Hcp family type VI secretion system effector [KO:K11903]
KSS97_00340  tssG; type VI secretion system baseplate subunit TssG [KO:K11895]
KSS97_01520  tssG; type VI secretion system baseplate subunit TssG [KO:K11895]
KSS97_12180  tssG; type VI secretion system baseplate subunit TssG [KO:K11895]
KSS97_13745  tssG; type VI secretion system baseplate subunit TssG [KO:K11895]
KSS97_17555  tssG; type VI secretion system baseplate subunit TssG [KO:K11895]
KSS97_00345  tssH; type VI secretion system ATPase TssH [KO:K11907]
KSS97_01525  tssH; type VI secretion system ATPase TssH [KO:K11907]
KSS97_12175  tssH; type VI secretion system ATPase TssH [KO:K11907]
KSS97_13690  tssH; type VI secretion system ATPase TssH [KO:K11907]
KSS97_23540  methyl-accepting chemotaxis protein [KO:K13487]
KSS97_23520  hybrid sensor histidine kinase/response regulator [KO:K13490]
KSS97_23535  chemotaxis protein CheW [KO:K13488]
KSS97_23525  chemotaxis protein CheW [KO:K13489]
KSS97_23515  chemotaxis response regulator protein-glutamate methylesterase [KO:K13491] [EC:3.1.1.61]
KSS97_23510  PleD family two-component system response regulator [KO:K11444] [EC:2.7.7.65]
KSS97_06830  GGDEF domain-containing protein [KO:K21019] [EC:2.7.7.65]
KSS97_04750  diguanylate cyclase [KO:K21021] [EC:2.7.7.65]
KSS97_11350  EAL domain-containing protein [KO:K21023] [EC:2.7.7.65]
KSS97_22280  EAL domain-containing protein [KO:K21024] [EC:3.1.4.52]
KSS97_06240  mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase [KO:K16011] [EC:2.7.7.13 5.3.1.8]
KSS97_06285  alginate biosynthesis protein Alg44 [KO:K19291] [EC:2.4.1.33]
KSS97_03745  molecular chaperone [KO:K23127]
Compound
C00044  GTP
C00575  3',5'-Cyclic AMP
C11837  N-Butyryl-L-homoserine lactone
C11848  2-Heptyl-3-hydroxy-quinolone
C16463  3',5'-Cyclic diGMP
C18076  5'-Phosphoguanylyl(3'->5')guanosine
C20643  2-Heptyl-4(1H)-quinolone
C21201  N-3-Oxo-dodecanoyl-L-homoserine lactone
Reference
  Authors
Coggan KA, Wolfgang MC
  Title
Global regulatory pathways and cross-talk control pseudomonas aeruginosa environmental lifestyle and virulence phenotype.
  Journal
Curr Issues Mol Biol 14:47-70 (2012)
Reference
  Authors
Rasamiravaka T, Labtani Q, Duez P, El Jaziri M
  Title
The formation of biofilms by Pseudomonas aeruginosa: a review of the natural and synthetic compounds interfering with control mechanisms.
  Journal
Biomed Res Int 2015:759348 (2015)
DOI:10.1155/2015/759348
Reference
  Authors
Valentini M, Filloux A
  Title
Biofilms and Cyclic di-GMP (c-di-GMP) Signaling: Lessons from Pseudomonas aeruginosa and Other Bacteria.
  Journal
J Biol Chem 291:12547-55 (2016)
DOI:10.1074/jbc.R115.711507
Reference
  Authors
Hengge R
  Title
Principles of c-di-GMP signalling in bacteria.
  Journal
Nat Rev Microbiol 7:263-73 (2009)
DOI:10.1038/nrmicro2109
Reference
  Authors
Liang ZX
  Title
The expanding roles of c-di-GMP in the biosynthesis of exopolysaccharides and secondary metabolites.
  Journal
Nat Prod Rep 32:663-83 (2015)
DOI:10.1039/c4np00086b
Reference
  Authors
Fulcher NB, Holliday PM, Klem E, Cann MJ, Wolfgang MC
  Title
The Pseudomonas aeruginosa Chp chemosensory system regulates intracellular cAMP levels by modulating adenylate cyclase activity.
  Journal
Mol Microbiol 76:889-904 (2010)
DOI:10.1111/j.1365-2958.2010.07135.x
Reference
  Authors
Marsden AE, Intile PJ, Schulmeyer KH, Simmons-Patterson ER, Urbanowski ML, Wolfgang MC, Yahr TL
  Title
Vfr Directly Activates exsA Transcription To Regulate Expression of the Pseudomonas aeruginosa Type III Secretion System.
  Journal
J Bacteriol 198:1442-50 (2016)
DOI:10.1128/JB.00049-16
Reference
  Authors
Brencic A, Lory S
  Title
Determination of the regulon and identification of novel mRNA targets of Pseudomonas aeruginosa RsmA.
  Journal
Mol Microbiol 72:612-32 (2009)
DOI:10.1111/j.1365-2958.2009.06670.x
Reference
  Authors
Hsu JL, Chen HC, Peng HL, Chang HY
  Title
Characterization of the histidine-containing phosphotransfer protein B-mediated multistep phosphorelay system in Pseudomonas aeruginosa PAO1.
  Journal
J Biol Chem 283:9933-44 (2008)
DOI:10.1074/jbc.M708836200
Reference
  Authors
Guvener ZT, Harwood CS
  Title
Subcellular location characteristics of the Pseudomonas aeruginosa GGDEF protein, WspR, indicate that it produces cyclic-di-GMP in response to growth on surfaces.
  Journal
Mol Microbiol 66:1459-73 (2007)
DOI:10.1111/j.1365-2958.2007.06008.x
Reference
  Authors
Irie Y, Starkey M, Edwards AN, Wozniak DJ, Romeo T, Parsek MR
  Title
Pseudomonas aeruginosa biofilm matrix polysaccharide Psl is regulated transcriptionally by RpoS and post-transcriptionally by RsmA.
  Journal
Mol Microbiol 78:158-72 (2010)
DOI:10.1111/j.1365-2958.2010.07320.x
Related
pathway
palv02024  Quorum sensing
palv02040  Flagellar assembly
palv03070  Bacterial secretion system
KO pathway
ko02025   
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