PATHWAY: pamo01100 Help Entry pamo01100                   Pathway                                 Name Metabolic pathways - Profundibacter amoris Class BRITE hierarchy Pathway map pamo01100   Metabolic pathways Module pamo_M00002   Glycolysis, core module involving three-carbon compounds [PATH:pamo01100] pamo_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pamo01100] pamo_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:pamo01100] pamo_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:pamo01100] pamo_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:pamo01100] pamo_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:pamo01100] pamo_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:pamo01100] pamo_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pamo01100] pamo_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pamo01100] pamo_M00015   Proline biosynthesis, glutamate => proline [PATH:pamo01100] pamo_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:pamo01100] pamo_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:pamo01100] pamo_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:pamo01100] pamo_M00021   Cysteine biosynthesis, serine => cysteine [PATH:pamo01100] pamo_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:pamo01100] pamo_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:pamo01100] pamo_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:pamo01100] pamo_M00046   Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:pamo01100] pamo_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:pamo01100] pamo_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:pamo01100] pamo_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:pamo01100] pamo_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:pamo01100] pamo_M00082   Fatty acid biosynthesis, initiation [PATH:pamo01100] pamo_M00083   Fatty acid biosynthesis, elongation [PATH:pamo01100] pamo_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:pamo01100] pamo_M00091   Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:pamo01100] pamo_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:pamo01100] pamo_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:pamo01100] pamo_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:pamo01100] pamo_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:pamo01100] pamo_M00140   C1-unit interconversion, prokaryotes [PATH:pamo01100] pamo_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:pamo01100] pamo_M00149   Succinate dehydrogenase, prokaryotes [PATH:pamo01100] pamo_M00151   Cytochrome bc1 complex respiratory unit [PATH:pamo01100] pamo_M00155   Cytochrome c oxidase, prokaryotes [PATH:pamo01100] pamo_M00156   Cytochrome c oxidase, cbb3-type [PATH:pamo01100] pamo_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:pamo01100] pamo_M00165   Reductive pentose phosphate cycle (Calvin cycle) [PATH:pamo01100] pamo_M00169   CAM (Crassulacean acid metabolism), light [PATH:pamo01100] pamo_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pamo01100] pamo_M00373   Ethylmalonyl pathway [PATH:pamo01100] pamo_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:pamo01100] pamo_M00529   Denitrification, nitrate => nitrogen [PATH:pamo01100] pamo_M00555   Betaine biosynthesis, choline => betaine [PATH:pamo01100] pamo_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:pamo01100] pamo_M00595   Thiosulfate oxidation by SOX complex, thiosulfate => sulfate [PATH:pamo01100] pamo_M00621   Glycine cleavage system [PATH:pamo01100] pamo_M00741   Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:pamo01100] pamo_M00793   dTDP-L-rhamnose biosynthesis [PATH:pamo01100] pamo_M00844   Arginine biosynthesis, ornithine => arginine [PATH:pamo01100] pamo_M00868   Heme biosynthesis, animals and fungi, glycine => heme [PATH:pamo01100] pamo_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:pamo01100] pamo_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:pamo01100] pamo_M00924   Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide [PATH:pamo01100] pamo_M00958   Adenine ribonucleotide degradation, AMP => Urate [PATH:pamo01100] pamo_M00959   Guanine ribonucleotide degradation, GMP => Urate [PATH:pamo01100] pamo_M00970   Proline degradation, proline => glutamate [PATH:pamo01100] Organism Profundibacter amoris [GN:pamo] Related pathway pamo00010   Glycolysis / Gluconeogenesis pamo00020   Citrate cycle (TCA cycle) pamo00030   Pentose phosphate pathway pamo00040   Pentose and glucuronate interconversions pamo00051   Fructose and mannose metabolism pamo00052   Galactose metabolism pamo00053   Ascorbate and aldarate metabolism pamo00061   Fatty acid biosynthesis pamo00071   Fatty acid degradation pamo00121   Secondary bile acid biosynthesis pamo00130   Ubiquinone and other terpenoid-quinone biosynthesis pamo00190   Oxidative phosphorylation pamo00220   Arginine biosynthesis pamo00230   Purine metabolism pamo00240   Pyrimidine metabolism pamo00250   Alanine, aspartate and glutamate metabolism pamo00260   Glycine, serine and threonine metabolism pamo00261   Monobactam biosynthesis pamo00270   Cysteine and methionine metabolism pamo00280   Valine, leucine and isoleucine degradation pamo00290   Valine, leucine and isoleucine biosynthesis pamo00300   Lysine biosynthesis pamo00310   Lysine degradation pamo00330   Arginine and proline metabolism pamo00332   Carbapenem biosynthesis pamo00340   Histidine metabolism pamo00350   Tyrosine metabolism pamo00360   Phenylalanine metabolism pamo00361   Chlorocyclohexane and chlorobenzene degradation pamo00362   Benzoate degradation pamo00380   Tryptophan metabolism pamo00400   Phenylalanine, tyrosine and tryptophan biosynthesis pamo00401   Novobiocin biosynthesis pamo00405   Phenazine biosynthesis pamo00410   beta-Alanine metabolism pamo00430   Taurine and hypotaurine metabolism pamo00440   Phosphonate and phosphinate metabolism pamo00450   Selenocompound metabolism pamo00460   Cyanoamino acid metabolism pamo00470   D-Amino acid metabolism pamo00480   Glutathione metabolism pamo00500   Starch and sucrose metabolism pamo00520   Amino sugar and nucleotide sugar metabolism pamo00521   Streptomycin biosynthesis pamo00523   Polyketide sugar unit biosynthesis pamo00525   Acarbose and validamycin biosynthesis pamo00540   Lipopolysaccharide biosynthesis pamo00541   O-Antigen nucleotide sugar biosynthesis pamo00543   Exopolysaccharide biosynthesis pamo00550   Peptidoglycan biosynthesis pamo00552   Teichoic acid biosynthesis pamo00561   Glycerolipid metabolism pamo00562   Inositol phosphate metabolism pamo00564   Glycerophospholipid metabolism pamo00620   Pyruvate metabolism pamo00622   Xylene degradation pamo00625   Chloroalkane and chloroalkene degradation pamo00626   Naphthalene degradation pamo00627   Aminobenzoate degradation pamo00630   Glyoxylate and dicarboxylate metabolism pamo00640   Propanoate metabolism pamo00643   Styrene degradation pamo00650   Butanoate metabolism pamo00660   C5-Branched dibasic acid metabolism pamo00670   One carbon pool by folate pamo00680   Methane metabolism pamo00730   Thiamine metabolism pamo00740   Riboflavin metabolism pamo00750   Vitamin B6 metabolism pamo00760   Nicotinate and nicotinamide metabolism pamo00770   Pantothenate and CoA biosynthesis pamo00780   Biotin metabolism pamo00785   Lipoic acid metabolism pamo00790   Folate biosynthesis pamo00860   Porphyrin metabolism pamo00900   Terpenoid backbone biosynthesis pamo00903   Limonene degradation pamo00906   Carotenoid biosynthesis pamo00907   Pinene, camphor and geraniol degradation pamo00910   Nitrogen metabolism pamo00920   Sulfur metabolism pamo00930   Caprolactam degradation pamo00999   Biosynthesis of various plant secondary metabolites KO pathway ko01100     LinkDB All DBs

DBGET integrated database retrieval system