KEGG   PATHWAY: pau02025
Entry
pau02025                    Pathway                                
Name
Biofilm formation - Pseudomonas aeruginosa - Pseudomonas aeruginosa UCBPP-PA14
Description
Surface colonization and subsequent biofilm formation and development provide numerous advantages to microorganisms. The main key actors relevant in the regulation of biofilm formation by Pseudomonas aeruginosa include cAMP/Vfr signaling, quorum sensing (QS) systems, Gac/Rsm pathway, and c-di-GMP signaling. cAMP/Vfr signaling regulates the transcription of hundreds of genes encoding diverse virulence factors, including the type 2 secretion system and type 3 secretion system and their associated toxins, type IV pili, and flagella. It is demonstrated that the accumulation of cAMP inhibits the attachment phase of biofilm formation. The QS systems are arranged hierarchically with the las system positively regulating both the rhl and PQS systems. These three QS systems are involved in the regulation of virulence factor production, biofilm maturation, and motility phenotypes. GacS/GacA two-component system is promoting the expression of two small regulatory RNAs, RsmY and RsmZ, which sequester the translational repressor RsmA. Titration of RsmA induces the production of sessile and biofilm determinants, whereas free RsmA leads to a planktonic and more virulent lifestyle. c-di-GMP is a ubiquitous bacterial second messenger. Synthesis and degradation of c-di-GMP is facilitated by diguanylate cyclases (DGC) and phosphodiesterases (PDE). High intracellular levels of c-di-GMP evoke the processes leading to the production of biofilm matrix, while a decrease in its level causes an increase in cell motility and transition into the planktonic forms of growth.
Class
Cellular Processes; Cellular community - prokaryotes
Pathway map
pau02025  Biofilm formation - Pseudomonas aeruginosa
pau02025

Organism
Pseudomonas aeruginosa UCBPP-PA14 [GN:pau]
Gene
PA14_05360  pilJ; type IV pili methyl-accepting chemotaxis transducer PilJ [KO:K02660]
PA14_05340  pilI; type IV pili signal transduction protein PilI [KO:K02659]
PA14_05390  chpA; ChpA [KO:K06596]
PA14_05410  chpC; putative chemotaxis protein methyltransferase CheR [KO:K06598]
PA14_05330  pilH; type IV pilus response regulator PilH [KO:K02658]
PA14_05320  pilG; type IV pili response regulator PilG [KO:K02657]
PA14_22620  cyaB; CyaB [KO:K01768] [EC:4.6.1.1]
PA14_65690  icc; putative phosphohydrolases [KO:K03651] [EC:3.1.4.53]
PA14_08370  vfr; cyclic AMP receptor-like protein [KO:K10914]
PA14_27700  putative transcriptional regulator [KO:K10914]
PA14_03580  putative putative transcriptional regulator [KO:K10914]
PA14_50220  fleQ; transcriptional regulator FleQ [KO:K10941]
PA14_42390  exsA; transcriptional regulator ExsA [KO:K20968]
PA14_45940  lasI; autoinducer synthesis protein LasI [KO:K13060] [EC:2.3.1.184]
PA14_45960  lasR; transcriptional regulator LasR [KO:K18304]
PA14_19130  rhlI; autoinducer synthesis protein RhlI [KO:K13061] [EC:2.3.1.184]
PA14_19120  rhlR; acylhomoserine lactone dependent transcriptional regulator [KO:K18099]
PA14_19100  rhlA; rhamnosyltransferase chain A [KO:K18100] [EC:2.4.1.-]
PA14_19110  rhlB; rhamnosyltransferase chain B [KO:K18101] [EC:2.4.1.-]
PA14_49760  rhlC; rhamnosyltransferase 2 [KO:K12990] [EC:2.4.1.-]
PA14_31290  pa1L; PA-I galactophilic lectin [KO:K20258]
PA14_31300  hypothetical protein [KO:K20259]
PA14_51360  phnA; anthranilate synthase component I [KO:K01657] [EC:4.1.3.27]
PA14_07940  trpE; anthranilate synthetase component I [KO:K01657] [EC:4.1.3.27]
PA14_08340  trpG; anthranilate synthase component II [KO:K01658] [EC:4.1.3.27]
PA14_51350  phnB; anthranilate synthase component II [KO:K01658] [EC:4.1.3.27]
PA14_51430  pqsA; probable coenzyme A ligase [KO:K18000] [EC:6.2.1.32]
PA14_51420  pqsB; PqsB [KO:K18001] [EC:2.3.1.230]
PA14_51410  pqsC; PqsC [KO:K18002] [EC:2.3.1.230]
PA14_51390  pqsD; 3-oxoacyl-[acyl-carrier-protein] synthase III [KO:K18003] [EC:2.3.1.262]
PA14_51380  pqsE; Quinolone signal response protein [KO:K20257] [EC:3.1.2.32]
PA14_30630  pqsH; putative FAD-dependent monooxygenase [KO:K17940] [EC:1.14.13.182]
PA14_51340  mvfR; Transcriptional regulator MvfR [KO:K19735]
PA14_52260  lemA; sensor/response regulator hybrid [KO:K07678] [EC:2.7.13.3]
PA14_64230  retS; RetS (Regulator of Exopolysaccharide and Type III Secretion) [KO:K20972]
PA14_19340  putative sensor/response regulator hybrid [KO:K20972]
PA14_30650  gacA; response regulator GacA [KO:K07689]
PA14_06875  rsmYregulatoryRNA [KO:K20969]
PA14_52570  rsmA; RsmA, regulator of secondary metabolites [KO:K03563]
PA14_27550  putative sensor/response regulator hybrid [KO:K20973] [EC:2.7.13.3]
PA14_43670  putative sensor/response regulator hybrid [KO:K20974] [EC:2.7.13.3]
PA14_38970  putative sensor histidine kinase protein [KO:K20975] [EC:2.7.13.3]
PA14_20800  putative histidine-containing phosphotransfer (HPt) domain [KO:K20976]
PA14_51480  hypothetical protein [KO:K20976]
PA14_20780  putative sensor histidine kinase/response regulator [KO:K20977]
PA14_20770  putative anti-sigma F factor antagonist [KO:K20978]
PA14_20730  flgM; putative negative regulator of flagellin synthesis, FlgM [KO:K02398]
PA14_45630  fliA; motility sigma factor FliA [KO:K02405]
PA14_00875  ppkA; serine/threonine protein kinase PpkA [KO:K11912] [EC:2.7.11.1]
PA14_42890  stp1; serine/threonine protein phosphatase [KO:K11915] [EC:3.1.3.16]
PA14_00890  putative serine/threonine phosphoprotein phosphatase [KO:K11915] [EC:3.1.3.16]
PA14_00900  conserved hypothetical protein [KO:K11890]
PA14_42900  conserved hypothetical protein [KO:K11891]
PA14_34130  conserved hypothetical protein [KO:K11891]
PA14_00910  conserved hypothetical protein [KO:K11891]
PA14_42920  conserved hypothetical protein [KO:K11893]
PA14_34100  hypothetical protein [KO:K11893]
PA14_00940  conserved hypothetical protein [KO:K11893]
PA14_00980  conserved hypothetical protein [KO:K11913]
PA14_00970  conserved hypothetical protein [KO:K11913]
PA14_00990  conserved hypothetical protein [KO:K11902]
PA14_34140  conserved hypothetical protein [KO:K11902]
PA14_43040  conserved hypothetical protein [KO:K11901]
PA14_01010  conserved hypothetical protein [KO:K11901]
PA14_34070  conserved hypothetical protein [KO:K11901]
PA14_01020  conserved hypothetical protein [KO:K11900]
PA14_34050  conserved hypothetical protein [KO:K11900]
PA14_43030  conserved hypothetical protein [KO:K11900]
PA14_34030  conserved hypothetical protein [KO:K11903]
PA14_03240  hcpC; Secreted protein Hcp [KO:K11903]
PA14_44890  hcpA; secreted protein Hcp [KO:K11903]
PA14_43070  hcpD; secreted protein Hcp [KO:K11903]
PA14_01030  conserved hypothetical protein [KO:K11903]
PA14_69560  hcpB; secreted protein Hcp [KO:K11903]
PA14_34000  conserved hypothetical protein [KO:K11895]
PA14_42990  conserved hypothetical protein [KO:K11895]
PA14_01080  conserved hypothetical protein [KO:K11895]
PA14_01100  clpB; putative ClpA/B-type chaperone [KO:K11907]
PA14_33990  probable ClpA/B-type protease [KO:K11907]
PA14_42980  putative ClpA/B-type protease [KO:K11907]
PA14_16430  wspA; putative methyl-accepting chemotaxis transducer [KO:K13487]
PA14_16470  wspE; putative chemotaxis sensor/effector fusion protein [KO:K13490]
PA14_16440  wspB; hypothetical protein [KO:K13488]
PA14_16460  wspD; CheW domain protein [KO:K13489]
PA14_16480  wspF; putative methylesterase, CheB-like [KO:K13491] [EC:3.1.1.61]
PA14_16500  wspR; probable two-component response regulator [KO:K11444] [EC:2.7.7.65]
PA14_56280  hypothetical protein [KO:K21019] [EC:2.7.7.65]
PA14_02110  putative GGDEF domain [KO:K21020] [EC:2.7.7.65]
PA14_49890  conserved hypothetical protein [KO:K21021] [EC:2.7.7.65]
PA14_50060  hypothetical protein [KO:K21022] [EC:2.7.7.65]
PA14_42220  putative integral membrane sensor domain [KO:K21023] [EC:2.7.7.65]
PA14_56790  putative GGDEF domain/EAL domain protein [KO:K21024] [EC:3.1.4.52]
PA14_18380  algA; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase [KO:K16011] [EC:2.7.7.13 5.3.1.8]
PA14_71970  wbpW; GDP-mannose pyrophosphorylase [KO:K16011] [EC:2.7.7.13 5.3.1.8]
PA14_35690  pslE; hypothetical protein [KO:K20998]
PA14_35680  pslF; possible glycosyl transferase [KO:K20999]
PA14_35670  pslG; putative glycosyl hydrolase [KO:K21000]
PA14_35650  pslH; possible glycosyltransferase [KO:K21001]
PA14_35640  pslI; putative glycosyltransferase [KO:K21002]
PA14_35630  pslJ; conserved hypothetical protein [KO:K21003]
PA14_35620  pslK; hypothetical protein [KO:K21004]
PA14_35600  pslL; possible acetyltransferase [KO:K21005]
PA14_24480  pelA; conserved hypothetical protein [KO:K21006]
PA14_24490  pelB; conserved hypothetical protein [KO:K21007]
PA14_24500  pelC; putative lipoprotein [KO:K21008]
PA14_24510  pelD; hypothetical protein [KO:K21009]
PA14_24530  pelE; hypothetical protein [KO:K21010]
PA14_24550  pelF; putative glycosyltransferase [KO:K21011]
PA14_24560  pelG; PelG [KO:K21012]
PA14_18550  alg44; alginate biosynthesis protein Alg44 [KO:K19291] [EC:2.4.1.33]
PA14_65540  fimX; conserved hypothetical protein [KO:K21025]
PA14_65520  conserved hypothetical protein [KO:K23127]
Compound
C00044  GTP
C00575  3',5'-Cyclic AMP
C11837  N-Butyryl-L-homoserine lactone
C11848  2-Heptyl-3-hydroxy-quinolone
C16463  3',5'-Cyclic diGMP
C18076  5'-Phosphoguanylyl(3'->5')guanosine
C20643  2-Heptyl-4(1H)-quinolone
C21201  N-3-Oxo-dodecanoyl-L-homoserine lactone
Reference
  Authors
Coggan KA, Wolfgang MC
  Title
Global regulatory pathways and cross-talk control pseudomonas aeruginosa environmental lifestyle and virulence phenotype.
  Journal
Curr Issues Mol Biol 14:47-70 (2012)
Reference
  Authors
Rasamiravaka T, Labtani Q, Duez P, El Jaziri M
  Title
The formation of biofilms by Pseudomonas aeruginosa: a review of the natural and synthetic compounds interfering with control mechanisms.
  Journal
Biomed Res Int 2015:759348 (2015)
DOI:10.1155/2015/759348
Reference
  Authors
Valentini M, Filloux A
  Title
Biofilms and Cyclic di-GMP (c-di-GMP) Signaling: Lessons from Pseudomonas aeruginosa and Other Bacteria.
  Journal
J Biol Chem 291:12547-55 (2016)
DOI:10.1074/jbc.R115.711507
Reference
  Authors
Hengge R
  Title
Principles of c-di-GMP signalling in bacteria.
  Journal
Nat Rev Microbiol 7:263-73 (2009)
DOI:10.1038/nrmicro2109
Reference
  Authors
Liang ZX
  Title
The expanding roles of c-di-GMP in the biosynthesis of exopolysaccharides and secondary metabolites.
  Journal
Nat Prod Rep 32:663-83 (2015)
DOI:10.1039/c4np00086b
Reference
  Authors
Fulcher NB, Holliday PM, Klem E, Cann MJ, Wolfgang MC
  Title
The Pseudomonas aeruginosa Chp chemosensory system regulates intracellular cAMP levels by modulating adenylate cyclase activity.
  Journal
Mol Microbiol 76:889-904 (2010)
DOI:10.1111/j.1365-2958.2010.07135.x
Reference
  Authors
Marsden AE, Intile PJ, Schulmeyer KH, Simmons-Patterson ER, Urbanowski ML, Wolfgang MC, Yahr TL
  Title
Vfr Directly Activates exsA Transcription To Regulate Expression of the Pseudomonas aeruginosa Type III Secretion System.
  Journal
J Bacteriol 198:1442-50 (2016)
DOI:10.1128/JB.00049-16
Reference
  Authors
Brencic A, Lory S
  Title
Determination of the regulon and identification of novel mRNA targets of Pseudomonas aeruginosa RsmA.
  Journal
Mol Microbiol 72:612-32 (2009)
DOI:10.1111/j.1365-2958.2009.06670.x
Reference
  Authors
Hsu JL, Chen HC, Peng HL, Chang HY
  Title
Characterization of the histidine-containing phosphotransfer protein B-mediated multistep phosphorelay system in Pseudomonas aeruginosa PAO1.
  Journal
J Biol Chem 283:9933-44 (2008)
DOI:10.1074/jbc.M708836200
Reference
  Authors
Guvener ZT, Harwood CS
  Title
Subcellular location characteristics of the Pseudomonas aeruginosa GGDEF protein, WspR, indicate that it produces cyclic-di-GMP in response to growth on surfaces.
  Journal
Mol Microbiol 66:1459-73 (2007)
DOI:10.1111/j.1365-2958.2007.06008.x
Reference
  Authors
Irie Y, Starkey M, Edwards AN, Wozniak DJ, Romeo T, Parsek MR
  Title
Pseudomonas aeruginosa biofilm matrix polysaccharide Psl is regulated transcriptionally by RpoS and post-transcriptionally by RsmA.
  Journal
Mol Microbiol 78:158-72 (2010)
DOI:10.1111/j.1365-2958.2010.07320.x
Related
pathway
pau02024  Quorum sensing
pau02040  Flagellar assembly
pau03070  Bacterial secretion system
KO pathway
ko02025   
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