KEGG   PATHWAY: pbac03018
Entry
pbac03018                   Pathway                                
Name
RNA degradation - Paenibacillus barcinonensis
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
pbac03018  RNA degradation
pbac03018

Other DBs
GO: 0006401
Organism
Paenibacillus barcinonensis [GN:pbac]
Gene
HUB98_17995  eno; phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
HUB98_28230  pnp; polyribonucleotide nucleotidyltransferase [KO:K00962] [EC:2.7.7.8]
HUB98_01030  DEAD/DEAH box helicase [KO:K11927] [EC:5.6.2.7]
HUB98_18005  rnr; ribonuclease R [KO:K12573] [EC:3.1.13.1]
HUB98_27085  DEAD/DEAH box helicase [KO:K05592] [EC:5.6.2.7]
HUB98_11570  DEAD/DEAH box helicase [KO:K05592] [EC:5.6.2.7]
HUB98_14810  DEAD/DEAH box helicase [KO:K05592] [EC:5.6.2.7]
HUB98_16305  DEAD/DEAH box helicase [KO:K05592] [EC:5.6.2.7]
HUB98_24135  recQ; DNA helicase RecQ [KO:K03654] [EC:5.6.2.4]
HUB98_17690  rho; transcription termination factor Rho [KO:K03628]
HUB98_28355  rny; ribonuclease Y [KO:K18682] [EC:3.1.-.-]
HUB98_00625  ribonuclease J [KO:K12574] [EC:3.1.-.-]
HUB98_28270  ribonuclease J [KO:K12574] [EC:3.1.-.-]
HUB98_27065  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
HUB98_08570  dnaK; molecular chaperone DnaK [KO:K04043]
HUB98_09920  Hsp70 family protein [KO:K04043]
HUB98_23385  groL; chaperonin GroEL [KO:K04077] [EC:5.6.1.7]
HUB98_04140  hfq; RNA chaperone Hfq [KO:K03666]
HUB98_11770  ppk1; polyphosphate kinase 1 [KO:K00937] [EC:2.7.4.1]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
KO pathway
ko03018   
LinkDB

DBGET integrated database retrieval system