KEGG   PATHWAY: pcop00020
Entry
pcop00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Phocaeicola coprophilus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pcop00020  Citrate cycle (TCA cycle)
pcop00020

Module
pcop_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pcop00020]
pcop_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pcop00020]
pcop_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pcop00020]
Other DBs
GO: 0006099
Organism
Phocaeicola coprophilus [GN:pcop]
Gene
I6J50_01385  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
I6J50_01375  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
I6J50_01380  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
I6J50_14885  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I6J50_03195  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
I6J50_14380  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
I6J50_03185  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
I6J50_14375  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
I6J50_03180  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
I6J50_03200  4Fe-4S binding protein [KO:K00176] [EC:1.2.7.3]
I6J50_14480  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
I6J50_14475  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
I6J50_14485  succinate dehydrogenase/fumarate reductase cytochrome b subunit [KO:K00241]
I6J50_12810  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
I6J50_17205  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
I6J50_11600  oxaloacetate decarboxylase [KO:K01960] [EC:6.4.1.1]
I6J50_14365  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
I6J50_09650  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pcop00010  Glycolysis / Gluconeogenesis
pcop00061  Fatty acid biosynthesis
pcop00071  Fatty acid degradation
pcop00190  Oxidative phosphorylation
pcop00220  Arginine biosynthesis
pcop00250  Alanine, aspartate and glutamate metabolism
pcop00280  Valine, leucine and isoleucine degradation
pcop00350  Tyrosine metabolism
pcop00470  D-Amino acid metabolism
pcop00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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