KEGG   PATHWAY: pdam04350
Entry
pdam04350                   Pathway                                
Name
TGF-beta signaling pathway - Pocillopora damicornis (lace coral)
Description
The transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines found in species ranging from worms and insects to mammals. A wide spectrum of cellular functions such as proliferation, apoptosis, differentiation and migration are regulated by TGF-beta family members. TGF-beta family member binds to the Type II receptor and recruits Type I, whereby Type II receptor phosphorylates and activates Type I. The Type I receptor, in turn, phosphorylates receptor-activated Smads ( R-Smads: Smad1, Smad2, Smad3, Smad5, and Smad8). Once phosphorylated, R-Smads associate with the co-mediator Smad, Smad4, and the heteromeric complex then translocates into the nucleus. In the nucleus, Smad complexes activate specific genes through cooperative interactions with other DNA-binding and coactivator (or co-repressor) proteins.
Class
Environmental Information Processing; Signal transduction
Pathway map
pdam04350  TGF-beta signaling pathway
pdam04350

Other DBs
GO: 0007179
Organism
Pocillopora damicornis (lace coral) [GN:pdam]
Gene
113682535  chordin-like [KO:K04657]
113671526  noggin-2-like [KO:K04658]
113671568  noggin-like [KO:K04658]
113681181  uncharacterized protein LOC113681181 [KO:K23318]
113672600  follistatin-like isoform X1 [KO:K04661]
113669028  bone morphogenetic protein 2-A-like isoform X1 [KO:K21283]
113669029  bone morphogenetic protein 2-like [KO:K21283]
113669300  bone morphogenetic protein 2-like isoform X1 [KO:K21283]
113676885  bone morphogenetic protein 2-like [KO:K21283]
113683424  protein decapentaplegic-like [KO:K21283]
113681183  bone morphogenetic protein 6-like [KO:K16620]
113672800  bone morphogenetic protein 7-like [KO:K16621]
113678720  growth/differentiation factor 6-A-like [KO:K20013]
113667221  tumor necrosis factor-like [KO:K03156]
113666405  uncharacterized protein LOC113666405 [KO:K06825]
113666413  uncharacterized protein LOC113666413 [KO:K06825]
113666414  uncharacterized protein LOC113666414 [KO:K06825]
113666415  uncharacterized protein LOC113666415 [KO:K06825]
113671019  transforming growth factor beta-2 proprotein-like [KO:K13376]
113666029  bone morphogenetic protein receptor type-1B-like [KO:K13578] [EC:2.7.11.30]
113682755  activin receptor type-1-like [KO:K04675] [EC:2.7.11.30]
113685711  bone morphogenetic protein receptor type-2-like [KO:K04671] [EC:2.7.11.30]
113668273  neogenin-like [KO:K06766]
113672707  RGM domain family member B-like isoform X1 [KO:K23096]
113673055  TGF-beta receptor type-1-like [KO:K04674] [EC:2.7.11.30]
113667578  mothers against decapentaplegic homolog 1-like [KO:K04676]
113667581  mothers against decapentaplegic homolog 5-like [KO:K16790]
113667438  mothers against decapentaplegic homolog 3-like [KO:K23605]
113670804  mothers against decapentaplegic homolog 4-like [KO:K04501]
113667440  mothers against decapentaplegic homolog 6-like [KO:K04677]
113683467  uncharacterized protein LOC113683467 [KO:K04679]
113671713  zinc finger FYVE domain-containing protein 9-like [KO:K04679]
113677930  RING-box protein 1 [KO:K03868] [EC:2.3.2.32]
113680847  cullin-1-like [KO:K03347]
113678011  S-phase kinase-associated protein 1 [KO:K03094]
113671903  mitogen-activated protein kinase 1-like [KO:K04371] [EC:2.7.11.24]
113682140  GTP-binding protein RHO1-like isoform X1 [KO:K04513]
113672514  ras-like GTP-binding protein RHO [KO:K04513]
113672516  ras-like GTP-binding protein RHO [KO:K04513]
113672533  ras-like GTP-binding protein RHO [KO:K04513]
113666488  serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like [KO:K03456]
113681459  serine/threonine-protein phosphatase 2A catalytic subunit beta isoform [KO:K04382] [EC:3.1.3.16]
113665493  ribosomal protein S6 kinase beta-1-like isoform X1 [KO:K04688] [EC:2.7.11.1]
113667112  transcription factor E2F4-like [KO:K04682]
113676806  histone acetyltransferase p300-like [KO:K04498] [EC:2.3.1.48]
113678762  ski oncogene-like [KO:K26503]
113668261  paired amphipathic helix protein Sin3a-like [KO:K11644]
113665133  histone deacetylase 1-like [KO:K06067] [EC:3.5.1.98]
113684593  homeobox protein TGIF2-like [KO:K19383]
113676714  transcriptional regulator Myc-1-like isoform X1 [KO:K04377]
113681741  transcriptional regulator Myc-A-like [KO:K04377]
113681742  transcriptional regulator Myc-2-like [KO:K04377]
113681758  uncharacterized protein LOC113681758 [KO:K04377]
113664511  pituitary homeobox 2-like [KO:K04686]
Compound
C14819  Fe3+
Reference
  Authors
Shi Y, Massague J.
  Title
Mechanisms of TGF-beta signaling from cell membrane to the nucleus.
  Journal
Cell 113:685-700 (2003)
DOI:10.1016/S0092-8674(03)00432-X
Reference
  Authors
Derynck R, Zhang YE.
  Title
Smad-dependent and Smad-independent pathways in TGF-beta family signalling.
  Journal
Nature 425:577-84 (2003)
DOI:10.1038/nature02006
Reference
  Authors
Massague J.
  Title
How cells read TGF-beta signals.
  Journal
Nat Rev Mol Cell Biol 1:169-78 (2000)
DOI:10.1038/35043051
Reference
  Authors
Siegel PM, Massague J.
  Title
Cytostatic and apoptotic actions of TGF-beta in homeostasis and cancer.
  Journal
Nat Rev Cancer 3:807-21 (2003)
DOI:10.1038/nrc1208
Reference
  Authors
Shimasaki S, Moore RK, Otsuka F, Erickson GF.
  Title
The bone morphogenetic protein system in mammalian reproduction.
  Journal
Endocr Rev 25:72-101 (2004)
DOI:10.1210/er.2003-0007
Reference
  Authors
De Robertis EM, Larrain J, Oelgeschlager M, Wessely O.
  Title
The establishment of Spemann's organizer and patterning of the vertebrate embryo.
  Journal
Nat Rev Genet 1:171-81 (2000)
DOI:10.1038/35042039
Reference
  Authors
Gumienny TL, Padgett RW.
  Title
The other side of TGF-beta superfamily signal regulation: thinking outside the cell.
  Journal
Trends Endocrinol Metab 13:295-9 (2002)
DOI:10.1016/S1043-2760(02)00615-X
Reference
  Authors
Hamada H, Meno C, Watanabe D, Saijoh Y.
  Title
Establishment of vertebrate left-right asymmetry.
  Journal
Nat Rev Genet 3:103-13 (2002)
DOI:10.1038/nrg732
Reference
  Authors
Chang H, Brown CW, Matzuk MM.
  Title
Genetic analysis of the mammalian transforming growth factor-beta superfamily.
  Journal
Endocr Rev 23:787-823 (2002)
DOI:10.1210/er.2002-0003
Reference
  Authors
Morita K, Chow KL, Ueno N.
  Title
Regulation of body length and male tail ray pattern formation of Caenorhabditis elegans by a member of TGF-beta family.
  Journal
Development 126:1337-47 (1999)
Reference
PMID:9847239
  Authors
Krishna S, Maduzia LL, Padgett RW.
  Title
Specificity of TGFbeta signaling is conferred by distinct type I receptors and their associated SMAD proteins in Caenorhabditis elegans.
  Journal
Development 126:251-60 (1999)
Reference
  Authors
Chen Y, Mironova E, Whitaker LL, Edwards L, Yost HJ, Ramsdell AF.
  Title
ALK4 functions as a receptor for multiple TGF beta-related ligands to regulate left-right axis determination and mesoderm induction in Xenopus.
  Journal
Dev Biol 268:280-94 (2004)
DOI:10.1016/j.ydbio.2003.12.035
Reference
  Authors
Onichtchouk D, Chen YG, Dosch R, Gawantka V, Delius H, Massague J, Niehrs C
  Title
Silencing of TGF-beta signalling by the pseudoreceptor BAMBI.
  Journal
Nature 401:480-5 (1999)
DOI:10.1038/46794
Reference
  Authors
Yan X, Lin Z, Chen F, Zhao X, Chen H, Ning Y, Chen YG
  Title
Human BAMBI cooperates with Smad7 to inhibit transforming growth factor-beta signaling.
  Journal
J Biol Chem 284:30097-104 (2009)
DOI:10.1074/jbc.M109.049304
Reference
PMID:8093006
  Authors
Hildebrand A, Romaris M, Rasmussen LM, Heinegard D, Twardzik DR, Border WA, Ruoslahti E
  Title
Interaction of the small interstitial proteoglycans biglycan, decorin and fibromodulin with transforming growth factor beta.
  Journal
Biochem J 302 ( Pt 2):527-34 (1994)
DOI:10.1042/bj3020527
Reference
  Authors
Soo C, Hu FY, Zhang X, Wang Y, Beanes SR, Lorenz HP, Hedrick MH, Mackool RJ, Plaas A, Kim SJ, Longaker MT, Freymiller E, Ting K
  Title
Differential expression of fibromodulin, a transforming growth factor-beta modulator, in fetal skin development and scarless repair.
  Journal
Am J Pathol 157:423-33 (2000)
DOI:10.1016/s0002-9440(10)64555-5
Reference
  Authors
Anderson GJ, Frazer DM
  Title
Iron metabolism meets signal transduction.
  Journal
Nat Genet 38:503-4 (2006)
DOI:10.1038/ng0506-503
Reference
  Authors
Canali S, Core AB, Zumbrennen-Bullough KB, Merkulova M, Wang CY, Schneyer AL, Pietrangelo A, Babitt JL
  Title
Activin B Induces Noncanonical SMAD1/5/8 Signaling via BMP Type I Receptors in Hepatocytes: Evidence for a Role in Hepcidin Induction by Inflammation in Male Mice.
  Journal
Endocrinology 157:1146-62 (2016)
DOI:10.1210/en.2015-1747
Reference
  Authors
Ganz T, Nemeth E
  Title
Iron homeostasis in host defence and inflammation.
  Journal
Nat Rev Immunol 15:500-10 (2015)
DOI:10.1038/nri3863
Reference
  Authors
Babitt JL, Zhang Y, Samad TA, Xia Y, Tang J, Campagna JA, Schneyer AL, Woolf CJ, Lin HY
  Title
Repulsive guidance molecule (RGMa), a DRAGON homologue, is a bone morphogenetic protein co-receptor.
  Journal
J Biol Chem 280:29820-7 (2005)
DOI:10.1074/jbc.M503511200
Reference
  Authors
Samad TA, Rebbapragada A, Bell E, Zhang Y, Sidis Y, Jeong SJ, Campagna JA, Perusini S, Fabrizio DA, Schneyer AL, Lin HY, Brivanlou AH, Attisano L, Woolf CJ
  Title
DRAGON, a bone morphogenetic protein co-receptor.
  Journal
J Biol Chem 280:14122-9 (2005)
DOI:10.1074/jbc.M410034200
Reference
  Authors
Vogt AS, Arsiwala T, Mohsen M, Vogel M, Manolova V, Bachmann MF
  Title
On Iron Metabolism and Its Regulation.
  Journal
Int J Mol Sci 22:ijms22094591 (2021)
DOI:10.3390/ijms22094591
Reference
  Authors
Ikushima H, Miyazono K
  Title
TGFbeta signalling: a complex web in cancer progression.
  Journal
Nat Rev Cancer 10:415-24 (2010)
DOI:10.1038/nrc2853
Related
pathway
pdam04120  Ubiquitin mediated proteolysis
KO pathway
ko04350   
LinkDB

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