KEGG   PATHWAY: pdz01100
Entry
pdz01100                    Pathway                                
Name
Metabolic pathways - Phytobacter diazotrophicus
Class
Pathway map
pdz01100  Metabolic pathways
pdz01100

Module
pdz_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:pdz01100]
pdz_M00002  Glycolysis, core module involving three-carbon compounds [PATH:pdz01100]
pdz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pdz01100]
pdz_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:pdz01100]
pdz_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:pdz01100]
pdz_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:pdz01100]
pdz_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:pdz01100]
pdz_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:pdz01100]
pdz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pdz01100]
pdz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pdz01100]
pdz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pdz01100]
pdz_M00012  Glyoxylate cycle [PATH:pdz01100]
pdz_M00015  Proline biosynthesis, glutamate => proline [PATH:pdz01100]
pdz_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:pdz01100]
pdz_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:pdz01100]
pdz_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:pdz01100]
pdz_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:pdz01100]
pdz_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:pdz01100]
pdz_M00021  Cysteine biosynthesis, serine => cysteine [PATH:pdz01100]
pdz_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:pdz01100]
pdz_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:pdz01100]
pdz_M00024  Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:pdz01100]
pdz_M00025  Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:pdz01100]
pdz_M00026  Histidine biosynthesis, PRPP => histidine [PATH:pdz01100]
pdz_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:pdz01100]
pdz_M00034  Methionine salvage pathway [PATH:pdz01100]
pdz_M00045  Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:pdz01100]
pdz_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:pdz01100]
pdz_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:pdz01100]
pdz_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:pdz01100]
pdz_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:pdz01100]
pdz_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:pdz01100]
pdz_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:pdz01100]
pdz_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:pdz01100]
pdz_M00060  KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:pdz01100]
pdz_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:pdz01100]
pdz_M00063  CMP-KDO biosynthesis [PATH:pdz01100]
pdz_M00064  ADP-L-glycero-D-manno-heptose biosynthesis [PATH:pdz01100]
pdz_M00082  Fatty acid biosynthesis, initiation [PATH:pdz01100]
pdz_M00083  Fatty acid biosynthesis, elongation [PATH:pdz01100]
pdz_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:pdz01100]
pdz_M00087  beta-Oxidation [PATH:pdz01100]
pdz_M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:pdz01100]
pdz_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:pdz01100]
pdz_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:pdz01100]
pdz_M00116  Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:pdz01100]
pdz_M00117  Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:pdz01100]
pdz_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:pdz01100]
pdz_M00119  Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:pdz01100]
pdz_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:pdz01100]
pdz_M00121  Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:pdz01100]
pdz_M00122  Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:pdz01100]
pdz_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:pdz01100]
pdz_M00124  Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:pdz01100]
pdz_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:pdz01100]
pdz_M00126  Tetrahydrofolate biosynthesis, GTP => THF [PATH:pdz01100]
pdz_M00127  Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:pdz01100]
pdz_M00144  NADH:quinone oxidoreductase, prokaryotes [PATH:pdz01100]
pdz_M00149  Succinate dehydrogenase, prokaryotes [PATH:pdz01100]
pdz_M00150  Fumarate reductase, prokaryotes [PATH:pdz01100]
pdz_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:pdz01100]
pdz_M00168  CAM (Crassulacean acid metabolism), dark [PATH:pdz01100]
pdz_M00175  Nitrogen fixation, nitrogen => ammonia [PATH:pdz01100]
pdz_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:pdz01100]
pdz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pdz01100]
pdz_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:pdz01100]
pdz_M00364  C10-C20 isoprenoid biosynthesis, bacteria [PATH:pdz01100]
pdz_M00417  Cytochrome o ubiquinol oxidase [PATH:pdz01100]
pdz_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:pdz01100]
pdz_M00530  Dissimilatory nitrate reduction, nitrate => ammonia [PATH:pdz01100]
pdz_M00531  Assimilatory nitrate reduction, nitrate => ammonia [PATH:pdz01100]
pdz_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:pdz01100]
pdz_M00550  Ascorbate degradation, ascorbate => D-xylulose-5P [PATH:pdz01100]
pdz_M00552  D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:pdz01100]
pdz_M00554  Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:pdz01100]
pdz_M00565  Trehalose biosynthesis, D-glucose 1P => trehalose [PATH:pdz01100]
pdz_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:pdz01100]
pdz_M00572  Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:pdz01100]
pdz_M00579  Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:pdz01100]
pdz_M00621  Glycine cleavage system [PATH:pdz01100]
pdz_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:pdz01100]
pdz_M00632  Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:pdz01100]
pdz_M00761  Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:pdz01100]
pdz_M00793  dTDP-L-rhamnose biosynthesis [PATH:pdz01100]
pdz_M00844  Arginine biosynthesis, ornithine => arginine [PATH:pdz01100]
pdz_M00846  Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:pdz01100]
pdz_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:pdz01100]
pdz_M00855  Glycogen degradation, glycogen => glucose-6P [PATH:pdz01100]
pdz_M00879  Arginine succinyltransferase pathway, arginine => glutamate [PATH:pdz01100]
pdz_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:pdz01100]
pdz_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:pdz01100]
pdz_M00899  Thiamine salvage pathway, HMP/HET => TMP [PATH:pdz01100]
pdz_M00909  UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:pdz01100]
pdz_M00924  Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide [PATH:pdz01100]
pdz_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:pdz01100]
pdz_M00939  Pyrimidine degradation, uracil => 3-hydroxypropanoate [PATH:pdz01100]
pdz_M00970  Proline degradation, proline => glutamate [PATH:pdz01100]
Organism
Phytobacter diazotrophicus [GN:pdz]
Related
pathway
pdz00010  Glycolysis / Gluconeogenesis
pdz00020  Citrate cycle (TCA cycle)
pdz00030  Pentose phosphate pathway
pdz00040  Pentose and glucuronate interconversions
pdz00051  Fructose and mannose metabolism
pdz00052  Galactose metabolism
pdz00053  Ascorbate and aldarate metabolism
pdz00061  Fatty acid biosynthesis
pdz00071  Fatty acid degradation
pdz00130  Ubiquinone and other terpenoid-quinone biosynthesis
pdz00190  Oxidative phosphorylation
pdz00220  Arginine biosynthesis
pdz00230  Purine metabolism
pdz00240  Pyrimidine metabolism
pdz00250  Alanine, aspartate and glutamate metabolism
pdz00260  Glycine, serine and threonine metabolism
pdz00261  Monobactam biosynthesis
pdz00270  Cysteine and methionine metabolism
pdz00280  Valine, leucine and isoleucine degradation
pdz00290  Valine, leucine and isoleucine biosynthesis
pdz00300  Lysine biosynthesis
pdz00310  Lysine degradation
pdz00330  Arginine and proline metabolism
pdz00332  Carbapenem biosynthesis
pdz00340  Histidine metabolism
pdz00350  Tyrosine metabolism
pdz00360  Phenylalanine metabolism
pdz00361  Chlorocyclohexane and chlorobenzene degradation
pdz00362  Benzoate degradation
pdz00364  Fluorobenzoate degradation
pdz00380  Tryptophan metabolism
pdz00400  Phenylalanine, tyrosine and tryptophan biosynthesis
pdz00401  Novobiocin biosynthesis
pdz00405  Phenazine biosynthesis
pdz00410  beta-Alanine metabolism
pdz00430  Taurine and hypotaurine metabolism
pdz00450  Selenocompound metabolism
pdz00460  Cyanoamino acid metabolism
pdz00470  D-Amino acid metabolism
pdz00480  Glutathione metabolism
pdz00500  Starch and sucrose metabolism
pdz00511  Other glycan degradation
pdz00520  Amino sugar and nucleotide sugar metabolism
pdz00521  Streptomycin biosynthesis
pdz00523  Polyketide sugar unit biosynthesis
pdz00525  Acarbose and validamycin biosynthesis
pdz00540  Lipopolysaccharide biosynthesis
pdz00541  O-Antigen nucleotide sugar biosynthesis
pdz00542  O-Antigen repeat unit biosynthesis
pdz00543  Exopolysaccharide biosynthesis
pdz00550  Peptidoglycan biosynthesis
pdz00552  Teichoic acid biosynthesis
pdz00561  Glycerolipid metabolism
pdz00562  Inositol phosphate metabolism
pdz00564  Glycerophospholipid metabolism
pdz00565  Ether lipid metabolism
pdz00592  alpha-Linolenic acid metabolism
pdz00620  Pyruvate metabolism
pdz00621  Dioxin degradation
pdz00622  Xylene degradation
pdz00623  Toluene degradation
pdz00625  Chloroalkane and chloroalkene degradation
pdz00626  Naphthalene degradation
pdz00627  Aminobenzoate degradation
pdz00630  Glyoxylate and dicarboxylate metabolism
pdz00633  Nitrotoluene degradation
pdz00640  Propanoate metabolism
pdz00643  Styrene degradation
pdz00650  Butanoate metabolism
pdz00660  C5-Branched dibasic acid metabolism
pdz00670  One carbon pool by folate
pdz00680  Methane metabolism
pdz00730  Thiamine metabolism
pdz00740  Riboflavin metabolism
pdz00750  Vitamin B6 metabolism
pdz00760  Nicotinate and nicotinamide metabolism
pdz00770  Pantothenate and CoA biosynthesis
pdz00780  Biotin metabolism
pdz00785  Lipoic acid metabolism
pdz00790  Folate biosynthesis
pdz00791  Atrazine degradation
pdz00860  Porphyrin metabolism
pdz00900  Terpenoid backbone biosynthesis
pdz00907  Pinene, camphor and geraniol degradation
pdz00910  Nitrogen metabolism
pdz00920  Sulfur metabolism
pdz00930  Caprolactam degradation
pdz00946  Degradation of flavonoids
pdz00999  Biosynthesis of various plant secondary metabolites
pdz01040  Biosynthesis of unsaturated fatty acids
pdz01053  Biosynthesis of siderophore group nonribosomal peptides
KO pathway
ko01100   
LinkDB

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