KEGG   PATHWAY: per03430
Entry
per03430                    Pathway                                
Name
Mismatch repair - Pantoea eucrina
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
per03430  Mismatch repair
per03430

Other DBs
GO: 0006298
Organism
Pantoea eucrina [GN:per]
Gene
LAC65_12505  mutS; DNA mismatch repair protein MutS [KO:K03555]
LAC65_14155  mutL; DNA mismatch repair endonuclease MutL [KO:K03572]
LAC65_12830  mutH; DNA mismatch repair endonuclease MutH [KO:K03573]
LAC65_00505  uvrD; DNA helicase II [KO:K03657] [EC:5.6.2.4]
LAC65_09755  sbcB; exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
LAC65_11840  xseA; exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
LAC65_03745  xseB; exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
LAC65_08645  exoX; exodeoxyribonuclease X [KO:K10857] [EC:3.1.11.-]
LAC65_12905  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
LAC65_11220  ssb; single-stranded DNA-binding protein [KO:K03111]
LAC65_01215  single-stranded DNA-binding protein [KO:K03111]
LAC65_02965  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
LAC65_00010  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
LAC65_04000  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
LAC65_04355  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
LAC65_06165  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
LAC65_03100  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
LAC65_09605  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
LAC65_16650  DNA polymerase III subunit theta [KO:K02345] [EC:2.7.7.7]
LAC65_08640  DNA polymerase III subunit theta [KO:K02345] [EC:2.7.7.7]
LAC65_01870  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
LAC65_02220  DNA polymerase III subunit psi [KO:K02344] [EC:2.7.7.7]
LAC65_11480  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
LAC65_14805  dam; adenine-specific DNA-methyltransferase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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