KEGG   PATHWAY: pfl01100
Entry
pfl01100                    Pathway                                
Name
Metabolic pathways - Pseudomonas protegens Pf-5
Class
Pathway map
pfl01100  Metabolic pathways
pfl01100

Module
pfl_M00002  Glycolysis, core module involving three-carbon compounds [PATH:pfl01100]
pfl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pfl01100]
pfl_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:pfl01100]
pfl_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:pfl01100]
pfl_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:pfl01100]
pfl_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:pfl01100]
pfl_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:pfl01100]
pfl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pfl01100]
pfl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pfl01100]
pfl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pfl01100]
pfl_M00015  Proline biosynthesis, glutamate => proline [PATH:pfl01100]
pfl_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:pfl01100]
pfl_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:pfl01100]
pfl_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:pfl01100]
pfl_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:pfl01100]
pfl_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:pfl01100]
pfl_M00021  Cysteine biosynthesis, serine => cysteine [PATH:pfl01100]
pfl_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:pfl01100]
pfl_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:pfl01100]
pfl_M00024  Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:pfl01100]
pfl_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:pfl01100]
pfl_M00036  Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:pfl01100]
pfl_M00040  Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH:pfl01100]
pfl_M00044  Tyrosine degradation, tyrosine => homogentisate [PATH:pfl01100]
pfl_M00045  Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:pfl01100]
pfl_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:pfl01100]
pfl_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:pfl01100]
pfl_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:pfl01100]
pfl_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:pfl01100]
pfl_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:pfl01100]
pfl_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:pfl01100]
pfl_M00063  CMP-KDO biosynthesis [PATH:pfl01100]
pfl_M00082  Fatty acid biosynthesis, initiation [PATH:pfl01100]
pfl_M00083  Fatty acid biosynthesis, elongation [PATH:pfl01100]
pfl_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:pfl01100]
pfl_M00087  beta-Oxidation [PATH:pfl01100]
pfl_M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:pfl01100]
pfl_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:pfl01100]
pfl_M00117  Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:pfl01100]
pfl_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:pfl01100]
pfl_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:pfl01100]
pfl_M00121  Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:pfl01100]
pfl_M00122  Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:pfl01100]
pfl_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:pfl01100]
pfl_M00124  Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:pfl01100]
pfl_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:pfl01100]
pfl_M00126  Tetrahydrofolate biosynthesis, GTP => THF [PATH:pfl01100]
pfl_M00144  NADH:quinone oxidoreductase, prokaryotes [PATH:pfl01100]
pfl_M00149  Succinate dehydrogenase, prokaryotes [PATH:pfl01100]
pfl_M00151  Cytochrome bc1 complex respiratory unit [PATH:pfl01100]
pfl_M00155  Cytochrome c oxidase, prokaryotes [PATH:pfl01100]
pfl_M00156  Cytochrome c oxidase, cbb3-type [PATH:pfl01100]
pfl_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:pfl01100]
pfl_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:pfl01100]
pfl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pfl01100]
pfl_M00417  Cytochrome o ubiquinol oxidase [PATH:pfl01100]
pfl_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:pfl01100]
pfl_M00533  Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate [PATH:pfl01100]
pfl_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:pfl01100]
pfl_M00551  Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol [PATH:pfl01100]
pfl_M00555  Betaine biosynthesis, choline => betaine [PATH:pfl01100]
pfl_M00568  Catechol ortho-cleavage, catechol => 3-oxoadipate [PATH:pfl01100]
pfl_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:pfl01100]
pfl_M00572  Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:pfl01100]
pfl_M00621  Glycine cleavage system [PATH:pfl01100]
pfl_M00637  Anthranilate degradation, anthranilate => catechol [PATH:pfl01100]
pfl_M00761  Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:pfl01100]
pfl_M00790  Pyrrolnitrin biosynthesis, tryptophan => pyrrolnitrin [PATH:pfl01100]
pfl_M00793  dTDP-L-rhamnose biosynthesis [PATH:pfl01100]
pfl_M00844  Arginine biosynthesis, ornithine => arginine [PATH:pfl01100]
pfl_M00846  Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:pfl01100]
pfl_M00879  Arginine succinyltransferase pathway, arginine => glutamate [PATH:pfl01100]
pfl_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:pfl01100]
pfl_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:pfl01100]
pfl_M00909  UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:pfl01100]
pfl_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:pfl01100]
pfl_M00947  D-Arginine racemization, D-arginine => L-arginine [PATH:pfl01100]
pfl_M00948  Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate [PATH:pfl01100]
pfl_M00957  Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA [PATH:pfl01100]
pfl_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:pfl01100]
pfl_M00959  Guanine ribonucleotide degradation, GMP => Urate [PATH:pfl01100]
pfl_M00970  Proline degradation, proline => glutamate [PATH:pfl01100]
pfl_M00975  Betaine degradation, bacteria, betaine => pyruvate [PATH:pfl01100]
Organism
Pseudomonas protegens Pf-5 [GN:pfl]
Related
pathway
pfl00010  Glycolysis / Gluconeogenesis
pfl00020  Citrate cycle (TCA cycle)
pfl00030  Pentose phosphate pathway
pfl00040  Pentose and glucuronate interconversions
pfl00051  Fructose and mannose metabolism
pfl00052  Galactose metabolism
pfl00053  Ascorbate and aldarate metabolism
pfl00061  Fatty acid biosynthesis
pfl00071  Fatty acid degradation
pfl00130  Ubiquinone and other terpenoid-quinone biosynthesis
pfl00190  Oxidative phosphorylation
pfl00220  Arginine biosynthesis
pfl00230  Purine metabolism
pfl00240  Pyrimidine metabolism
pfl00250  Alanine, aspartate and glutamate metabolism
pfl00260  Glycine, serine and threonine metabolism
pfl00261  Monobactam biosynthesis
pfl00270  Cysteine and methionine metabolism
pfl00280  Valine, leucine and isoleucine degradation
pfl00290  Valine, leucine and isoleucine biosynthesis
pfl00300  Lysine biosynthesis
pfl00310  Lysine degradation
pfl00330  Arginine and proline metabolism
pfl00332  Carbapenem biosynthesis
pfl00333  Prodigiosin biosynthesis
pfl00340  Histidine metabolism
pfl00350  Tyrosine metabolism
pfl00360  Phenylalanine metabolism
pfl00361  Chlorocyclohexane and chlorobenzene degradation
pfl00362  Benzoate degradation
pfl00364  Fluorobenzoate degradation
pfl00380  Tryptophan metabolism
pfl00400  Phenylalanine, tyrosine and tryptophan biosynthesis
pfl00401  Novobiocin biosynthesis
pfl00404  Staurosporine biosynthesis
pfl00410  beta-Alanine metabolism
pfl00430  Taurine and hypotaurine metabolism
pfl00440  Phosphonate and phosphinate metabolism
pfl00450  Selenocompound metabolism
pfl00460  Cyanoamino acid metabolism
pfl00470  D-Amino acid metabolism
pfl00480  Glutathione metabolism
pfl00500  Starch and sucrose metabolism
pfl00520  Amino sugar and nucleotide sugar metabolism
pfl00521  Streptomycin biosynthesis
pfl00523  Polyketide sugar unit biosynthesis
pfl00525  Acarbose and validamycin biosynthesis
pfl00540  Lipopolysaccharide biosynthesis
pfl00541  O-Antigen nucleotide sugar biosynthesis
pfl00543  Exopolysaccharide biosynthesis
pfl00550  Peptidoglycan biosynthesis
pfl00552  Teichoic acid biosynthesis
pfl00561  Glycerolipid metabolism
pfl00562  Inositol phosphate metabolism
pfl00564  Glycerophospholipid metabolism
pfl00565  Ether lipid metabolism
pfl00592  alpha-Linolenic acid metabolism
pfl00620  Pyruvate metabolism
pfl00622  Xylene degradation
pfl00623  Toluene degradation
pfl00625  Chloroalkane and chloroalkene degradation
pfl00626  Naphthalene degradation
pfl00627  Aminobenzoate degradation
pfl00630  Glyoxylate and dicarboxylate metabolism
pfl00633  Nitrotoluene degradation
pfl00640  Propanoate metabolism
pfl00643  Styrene degradation
pfl00650  Butanoate metabolism
pfl00660  C5-Branched dibasic acid metabolism
pfl00670  One carbon pool by folate
pfl00680  Methane metabolism
pfl00730  Thiamine metabolism
pfl00740  Riboflavin metabolism
pfl00750  Vitamin B6 metabolism
pfl00760  Nicotinate and nicotinamide metabolism
pfl00770  Pantothenate and CoA biosynthesis
pfl00780  Biotin metabolism
pfl00785  Lipoic acid metabolism
pfl00790  Folate biosynthesis
pfl00791  Atrazine degradation
pfl00860  Porphyrin metabolism
pfl00900  Terpenoid backbone biosynthesis
pfl00907  Pinene, camphor and geraniol degradation
pfl00910  Nitrogen metabolism
pfl00920  Sulfur metabolism
pfl00930  Caprolactam degradation
pfl00946  Degradation of flavonoids
pfl00998  Biosynthesis of various antibiotics
pfl00999  Biosynthesis of various plant secondary metabolites
pfl01040  Biosynthesis of unsaturated fatty acids
pfl01053  Biosynthesis of siderophore group nonribosomal peptides
KO pathway
ko01100   
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