KEGG   PATHWAY: pmaz03030
Entry
pmaz03030                   Pathway                                
Name
DNA replication - Pseudoalteromonas maricaloris
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
pmaz03030  DNA replication
pmaz03030

Organism
Pseudoalteromonas maricaloris [GN:pmaz]
Gene
R5H13_10510  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
R5H13_12855  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
R5H13_15790  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
R5H13_19505  exonuclease domain-containing protein [KO:K02342] [EC:2.7.7.7]
R5H13_12060  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
R5H13_06830  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
R5H13_10110  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
R5H13_14020  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
R5H13_03405  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
R5H13_00010  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
R5H13_02095  dnaB; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
R5H13_16145  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
R5H13_17340  ssb; single-stranded DNA-binding protein [KO:K03111]
R5H13_12860  rnhA; ribonuclease HI [KO:K03469] [EC:3.1.26.4]
R5H13_12065  rnhB; ribonuclease HII [KO:K03470] [EC:3.1.26.4]
R5H13_01365  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
R5H13_15610  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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