KEGG   PATHWAY: pmei00900
Entry
pmei00900                   Pathway                                
Name
Terpenoid backbone biosynthesis - Poecilia mexicana (shortfin molly)
Description
Terpenoids, also known as isoprenoids, are a large class of natural products consisting of isoprene (C5) units. There are two biosynthetic pathways, the mevalonate pathway [MD:M00095] and the non-mevalonate pathway or the MEP/DOXP pathway [MD:M00096], for the terpenoid building blocks: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). The action of prenyltransferases then generates higher-order building blocks: geranyl diphosphate (GPP), farsenyl diphosphate (FPP), and geranylgeranyl diphosphate (GGPP), which are the precursors of monoterpenoids (C10), sesquiterpenoids (C15), and diterpenoids (C20), respectively. Condensation of these building blocks gives rise to the precursors of sterols (C30) and carotenoids (C40). The MEP/DOXP pathway is absent in higher animals and fungi, but in green plants the MEP/DOXP and mevalonate pathways co-exist in separate cellular compartments. The MEP/DOXP pathway, operating in the plastids, is responsible for the formation of essential oil monoterpenes and linalyl acetate, some sesquiterpenes, diterpenes, and carotenoids and phytol. The mevalonate pathway, operating in the cytosol, gives rise to triterpenes, sterols, and most sesquiterpenes.
Class
Metabolism; Metabolism of terpenoids and polyketides
Pathway map
pmei00900  Terpenoid backbone biosynthesis
pmei00900

Module
pmei_M00095  C5 isoprenoid biosynthesis, mevalonate pathway [PATH:pmei00900]
pmei_M00367  C10-C20 isoprenoid biosynthesis, non-plant eukaryotes [PATH:pmei00900]
Other DBs
GO: 0009240 0016091
Organism
Poecilia mexicana (shortfin molly) [GN:pmei]
Gene
106926301  acat1; acetyl-CoA acetyltransferase, mitochondrial isoform X1 [KO:K00626] [EC:2.3.1.9]
106920694  acat2; acetyl-CoA acetyltransferase, cytosolic [KO:K00626] [EC:2.3.1.9]
106929961  LOW QUALITY PROTEIN: hydroxymethylglutaryl-CoA synthase, cytoplasmic-like [KO:K01641] [EC:2.3.3.10]
106912233  3-hydroxy-3-methylglutaryl-coenzyme A reductase-like [KO:K00021] [EC:1.1.1.34]
106910235  3-hydroxy-3-methylglutaryl-coenzyme A reductase-like [KO:K00021] [EC:1.1.1.34]
106928741  3-hydroxy-3-methylglutaryl-coenzyme A reductase-like isoform X1 [KO:K00021] [EC:1.1.1.34]
106918418  mvk; mevalonate kinase [KO:K00869] [EC:2.7.1.36]
106932707  pmvk; phosphomevalonate kinase [KO:K13273] [EC:2.7.4.2]
106924097  mvd; diphosphomevalonate decarboxylase [KO:K01597] [EC:4.1.1.33]
106914580  idi1; isopentenyl-diphosphate Delta-isomerase 1 [KO:K01823] [EC:5.3.3.2]
106917904  fdps; farnesyl pyrophosphate synthase isoform X1 [KO:K00787] [EC:2.5.1.1 2.5.1.10]
106930330  ggps1; geranylgeranyl pyrophosphate synthase [KO:K00804] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
106923950  pdss1; decaprenyl-diphosphate synthase subunit 1 [KO:K12504] [EC:2.5.1.91]
106922930  pdss2; decaprenyl-diphosphate synthase subunit 2 [KO:K12505] [EC:2.5.1.91]
106916561  dhdds; dehydrodolichyl diphosphate syntase complex subunit DHDDS [KO:K11778] [EC:2.5.1.87]
106929433  nus1; dehydrodolichyl diphosphate syntase complex subunit NUS1 [KO:K19177] [EC:2.5.1.87]
106921462  fnta; protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [KO:K05955] [EC:2.5.1.58 2.5.1.59]
106932454  protein farnesyltransferase subunit beta-like [KO:K05954] [EC:2.5.1.58]
106917265  rce1; CAAX prenyl protease 2 [KO:K08658] [EC:3.4.26.1]
106929841  zmpste24; CAAX prenyl protease 1 homolog [KO:K06013] [EC:3.4.24.84]
106931530  icmt; protein-S-isoprenylcysteine O-methyltransferase [KO:K00587] [EC:2.1.1.100]
106907593  pcyox1l; prenylcysteine oxidase-like [KO:K05906] [EC:1.8.3.5 1.8.3.6]
106927958  pcyox1; prenylcysteine oxidase 1 [KO:K05906] [EC:1.8.3.5 1.8.3.6]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00118  D-Glyceraldehyde 3-phosphate
C00129  Isopentenyl diphosphate
C00235  Dimethylallyl diphosphate
C00332  Acetoacetyl-CoA
C00341  Geranyl diphosphate
C00353  Geranylgeranyl diphosphate
C00356  (S)-3-Hydroxy-3-methylglutaryl-CoA
C00418  (R)-Mevalonate
C00448  trans,trans-Farnesyl diphosphate
C01107  (R)-5-Phosphomevalonate
C01126  (2E,6E)-Farnesol
C01143  (R)-5-Diphosphomevalonate
C01230  all-trans-Hexaprenyl diphosphate
C02321  cis-1,4-Polyisoprene
C03461  2-trans,6-trans-Farnesal
C04145  all-trans-Nonaprenyl diphosphate
C04146  all-trans-Octaprenyl diphosphate
C04216  all-trans-Heptaprenyl diphosphate
C04506  Protein C-terminal S-farnesyl-L-cysteine
C04574  di-trans,poly-cis-Undecaprenyl diphosphate
C04748  Protein C-terminal S-farnesyl-L-cysteine methyl ester
C05427  Phytyl diphosphate
C05859  ditrans,polycis-Polyprenyl diphosphate
C06081  Polyprenol
C11434  2-C-Methyl-D-erythritol 4-phosphate
C11435  4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11436  2-Phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11437  1-Deoxy-D-xylulose 5-phosphate
C11453  2-C-Methyl-D-erythritol 2,4-cyclodiphosphate
C11811  1-Hydroxy-2-methyl-2-butenyl 4-diphosphate
C16521  Isoprene
C16826  2-cis,6-trans-Farnesyl diphosphate
C17432  all-trans-Decaprenyl diphosphate
C18321  trans,octacis-Decaprenyl diphosphate
C19691  Farnesylcysteine
C19760  2-cis,6-cis-Farnesyl diphosphate
C19852  tritrans,heptacis-Undecaprenyl diphosphate
C19853  trans,polycis-Polyprenyl diphosphate
C20120  S-Farnesyl protein
C20121  trans,trans-Farnesyl phosphate
C20345  Isopentenyl phosphate
C20847  (R)-Mevalonate 3-phosphate
C20848  (R)-Mevalonate 3,5-bisphosphate
C22453  trans-Anhydromevalonate 5-phosphate
Reference
  Authors
Lange BM, Ghassemian M.
  Title
Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism.
  Journal
Plant Mol Biol 51:925-48 (2003)
DOI:10.1023/A:1023005504702
Reference
  Authors
Saiki R, Nagata A, Kainou T, Matsuda H, Kawamukai M
  Title
Characterization of solanesyl and decaprenyl diphosphate synthases in mice and humans.
  Journal
FEBS J 272:5606-22 (2005)
DOI:10.1111/j.1742-4658.2005.04956.x
Reference
PMID:9858571
  Authors
Sato M, Sato K, Nishikawa S, Hirata A, Kato J, Nakano A
  Title
The yeast RER2 gene, identified by endoplasmic reticulum protein localization mutations, encodes cis-prenyltransferase, a key enzyme in dolichol synthesis.
  Journal
Mol Cell Biol 19:471-83 (1999)
DOI:10.1128/MCB.19.1.471
Reference
  Authors
Vannice JC, Skaff DA, Keightley A, Addo JK, Wyckoff GJ, Miziorko HM
  Title
Identification in Haloferax volcanii of phosphomevalonate decarboxylase and isopentenyl phosphate kinase as catalysts of the terminal enzyme reactions in an  archaeal alternate mevalonate pathway.
  Journal
J Bacteriol 196:1055-63 (2014)
DOI:10.1128/JB.01230-13
Related
pathway
pmei00010  Glycolysis / Gluconeogenesis
pmei00100  Steroid biosynthesis
pmei00130  Ubiquinone and other terpenoid-quinone biosynthesis
pmei00270  Cysteine and methionine metabolism
pmei00510  N-Glycan biosynthesis
KO pathway
ko00900   
LinkDB

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