KEGG   PATHWAY: pmum04120
Entry
pmum04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Prunus mume (Japanese apricot)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
pmum04120  Ubiquitin mediated proteolysis
pmum04120

Other DBs
GO: 0016567
Organism
Prunus mume (Japanese apricot) [GN:pmum]
Gene
107881829  polyubiquitin [KO:K08770]
103324495  polyubiquitin-A [KO:K08770]
103342502  polyubiquitin isoform X1 [KO:K08770]
103341751  ubiquitin-60S ribosomal protein L40 [KO:K02927]
103333587  ubiquitin-60S ribosomal protein L40 [KO:K02927]
103321789  ubiquitin [KO:K02977]
103327275  ubiquitin-40S ribosomal protein S27a [KO:K02977]
103334185  ubiquitin-activating enzyme E1 1-like isoform X1 [KO:K03178] [EC:6.2.1.45]
103341389  ubiquitin-activating enzyme E1 1-like [KO:K03178] [EC:6.2.1.45]
103338089  SUMO-activating enzyme subunit 1A-like [KO:K10684] [EC:6.2.1.45]
103335702  SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
103322816  NEDD8-activating enzyme E1 catalytic subunit [KO:K10686] [EC:6.2.1.64]
103321620  ubiquitin-conjugating enzyme E2 2-like [KO:K10573] [EC:2.3.2.23]
103338405  ubiquitin-conjugating enzyme E2 2 [KO:K10573] [EC:2.3.2.23]
103338407  ubiquitin-conjugating enzyme E2 2 [KO:K10573] [EC:2.3.2.23]
103335771  ubiquitin-conjugating enzyme E2 1-like [KO:K10573] [EC:2.3.2.23]
103332380  probable ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
103344017  ubiquitin-conjugating enzyme E2 19-like [KO:K06688] [EC:2.3.2.23]
103332383  ubiquitin-conjugating enzyme E2 20-like [KO:K06688] [EC:2.3.2.23]
103338499  ubiquitin-conjugating enzyme E2-17 kDa [KO:K06689] [EC:2.3.2.23]
103319404  ubiquitin-conjugating enzyme E2-17 kDa [KO:K06689] [EC:2.3.2.23]
103342792  ubiquitin-conjugating enzyme E2 28 [KO:K06689] [EC:2.3.2.23]
103332277  ubiquitin-conjugating enzyme E2-17 kDa-like [KO:K06689] [EC:2.3.2.23]
103333677  ubiquitin-conjugating enzyme E2 10 [KO:K06689] [EC:2.3.2.23]
103334823  ubiquitin-conjugating enzyme E2 28-like [KO:K06689] [EC:2.3.2.23]
103324245  ubiquitin-conjugating enzyme E2-17 kDa-like isoform X1 [KO:K06689] [EC:2.3.2.23]
103330491  constitutive photomorphogenesis protein 10 [KO:K20217] [EC:2.3.2.23]
103323101  ubiquitin-conjugating enzyme E2 7 [KO:K10575] [EC:2.3.2.23]
103332633  ubiquitin-conjugating enzyme E2 7 isoform X2 [KO:K10575] [EC:2.3.2.23]
103338316  ubiquitin-conjugating enzyme E2-23 kDa-like [KO:K10576] [EC:2.3.2.23]
103332105  ubiquitin-conjugating enzyme E2-23 kDa isoform X1 [KO:K10576] [EC:2.3.2.23]
103337542  ubiquitin-conjugating enzyme E2 4 [KO:K10576] [EC:2.3.2.23]
103320362  SUMO-conjugating enzyme SCE1-like [KO:K10577]
103342268  SUMO-conjugating enzyme SCE1 [KO:K10577]
103337686  ubiquitin-conjugating enzyme E2 10 [KO:K10577]
103323158  ubiquitin-conjugating enzyme E2 32 [KO:K10578] [EC:2.3.2.23]
103327548  ubiquitin-conjugating enzyme E2 34 [KO:K04554] [EC:2.3.2.23]
103338126  ubiquitin-conjugating enzyme E2 27 [KO:K04649] [EC:2.3.2.23]
103320812  probable NEDD8-conjugating enzyme Ubc12-like [KO:K10579] [EC:2.3.2.34]
103335549  NEDD8-conjugating enzyme Ubc12-like [KO:K10579] [EC:2.3.2.34]
103340040  NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
103326097  ubiquitin-conjugating enzyme E2 36 [KO:K10580] [EC:2.3.2.23]
103328306  ubiquitin-conjugating enzyme E2 36 [KO:K10580] [EC:2.3.2.23]
103323204  probable ubiquitin-conjugating enzyme E2 25 [KO:K10581] [EC:2.3.2.24]
103324768  probable ubiquitin-conjugating enzyme E2 24 [KO:K10581] [EC:2.3.2.24]
103326325  probable ubiquitin-conjugating enzyme E2 25 [KO:K10581] [EC:2.3.2.24]
103328394  putative ubiquitin-conjugating enzyme E2 38 [KO:K10581] [EC:2.3.2.24]
103334844  LOW QUALITY PROTEIN: probable ubiquitin-conjugating enzyme E2 23 [KO:K10581] [EC:2.3.2.24]
103339146  ubiquitin-conjugating enzyme E2 22 [KO:K10583] [EC:2.3.2.23]
103321324  probable ubiquitin-conjugating enzyme E2 18 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
103340151  probable ubiquitin-conjugating enzyme E2 18 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
103339769  E3 ubiquitin-protein ligase UPL7 [KO:K10588] [EC:2.3.2.26]
103323228  E3 ubiquitin-protein ligase UPL6 isoform X1 [KO:K10589] [EC:2.3.2.26]
103337775  E3 ubiquitin-protein ligase UPL4 [KO:K10590] [EC:2.3.2.26]
103334820  E3 ubiquitin-protein ligase UPL3 [KO:K10590] [EC:2.3.2.26]
103319469  E3 ubiquitin-protein ligase UPL2-like [KO:K10592] [EC:2.3.2.26]
103320000  LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL1 [KO:K10592] [EC:2.3.2.26]
103330069  probable ubiquitin conjugation factor E4 [KO:K10597] [EC:2.3.2.27]
103342813  E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
103336630  peptidyl-prolyl cis-trans isomerase CYP65 [KO:K10598] [EC:5.2.1.8]
103343381  pre-mRNA-processing factor 19-like [KO:K10599] [EC:2.3.2.27]
103326466  E3 ubiquitin-protein ligase SINAT2-like isoform X1 [KO:K04506] [EC:2.3.2.27]
103328701  putative E3 ubiquitin-protein ligase SINA-like 6 [KO:K04506] [EC:2.3.2.27]
103332202  E3 ubiquitin-protein ligase SINAT3 [KO:K04506] [EC:2.3.2.27]
103335126  E3 ubiquitin-protein ligase SINA-like 7 [KO:K04506] [EC:2.3.2.27]
103337752  E3 ubiquitin-protein ligase SINAT3-like [KO:K04506] [EC:2.3.2.27]
103333647  E3 ubiquitin-protein ligase SINAT5-like [KO:K04506] [EC:2.3.2.27]
103339395  E3 ubiquitin-protein ligase SINAT2 [KO:K04506] [EC:2.3.2.27]
103343720  E3 ubiquitin-protein ligase SINAT5-like [KO:K04506] [EC:2.3.2.27]
103324452  E3 ubiquitin-protein ligase COP1-like isoform X1 [KO:K10143] [EC:2.3.2.27]
103336862  E3 ubiquitin-protein ligase COP1-like [KO:K10143] [EC:2.3.2.27]
103333227  WD repeat-containing protein RUP2 [KO:K10143] [EC:2.3.2.27]
103320011  E3 ubiquitin-protein ligase MIEL1 [KO:K10144] [EC:2.3.2.27]
103322930  E3 ubiquitin-protein ligase MIEL1 [KO:K10144] [EC:2.3.2.27]
103333867  E3 ubiquitin-protein ligase MIEL1 [KO:K10144] [EC:2.3.2.27]
103339808  E3 ubiquitin-protein ligase MIEL1 [KO:K10144] [EC:2.3.2.27]
103337695  E4 SUMO-protein ligase PIAL2 [KO:K04706] [EC:2.3.2.-]
103333507  ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [KO:K10601] [EC:2.3.2.27]
103335791  E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
103331948  RING-box protein 1a [KO:K03868] [EC:2.3.2.32]
103331952  RING-box protein 1a-like [KO:K03868] [EC:2.3.2.32]
103333883  cullin-1 [KO:K03347]
103322993  cullin-1-like [KO:K03347]
103321215  SKP1-like protein 1B [KO:K03094]
103325001  SKP1-like protein 1A [KO:K03094]
103325734  SKP1-like protein 1A [KO:K03094]
103332477  SKP1-like protein 13 [KO:K03094]
103331270  SKP1-like protein 1B [KO:K03094]
103331274  SKP1-like protein 1A [KO:K03094]
103343563  SKP1-like protein 1B [KO:K03094]
103343934  SKP1-like protein 11 [KO:K03094]
103344477  SKP1-like protein 1A [KO:K03094]
103331313  SKP1-like protein 11 [KO:K03094]
103340400  SKP1-like protein 1A [KO:K03094]
103334834  SKP1-like protein 1A [KO:K03094]
103334835  SKP1-like protein 1A [KO:K03094]
103336511  F-box protein SKP2A [KO:K03875]
103321803  transcription elongation factor B polypeptide 1 [KO:K03872]
103341298  uncharacterized protein LOC103341298 [KO:K03873]
103321593  cullin-3A [KO:K03869]
103330213  cullin-3B-like [KO:K03869]
103325198  cullin-4 [KO:K10609]
103325185  DNA damage-binding protein 1 [KO:K10610]
103320795  protein DAMAGED DNA-BINDING 2 [KO:K10140]
103320423  DNA excision repair protein ERCC-8 [KO:K10570]
103330756  light-mediated development protein DET1 isoform X1 [KO:K10571]
103343693  anaphase-promoting complex subunit 11 [KO:K03358]
103344512  anaphase-promoting complex subunit 11-like [KO:K03358]
103331206  anaphase-promoting complex subunit 11 [KO:K03358]
103324125  anaphase-promoting complex subunit 2 [KO:K03349]
103322354  cell division cycle 20.2, cofactor of APC complex-like [KO:K03363]
103323361  LOW QUALITY PROTEIN: cell division cycle 20.2, cofactor of APC complex-like [KO:K03363]
103339597  cell division cycle 20.1, cofactor of APC complex-like [KO:K03363]
103331608  cell division cycle 20.1, cofactor of APC complex-like isoform X1 [KO:K03363]
103333522  cell division cycle 20.2, cofactor of APC complex-like [KO:K03363]
107881182  cell division cycle 20.3, cofactor of APC complex-like [KO:K03363]
103337375  protein FIZZY-RELATED 2-like [KO:K03364]
103332668  protein FIZZY-RELATED 3 [KO:K03364]
103332797  anaphase-promoting complex subunit 1 [KO:K03348]
103340837  cell division cycle protein 27 homolog B [KO:K03350]
103324640  anaphase-promoting complex subunit 4 [KO:K03351]
103328929  anaphase-promoting complex subunit 5 [KO:K03352]
103325978  anaphase-promoting complex subunit 6 [KO:K03353]
103322939  anaphase-promoting complex subunit 7 [KO:K03354]
103338285  anaphase-promoting complex subunit 8 [KO:K03355]
103340103  anaphase-promoting complex subunit 10 [KO:K03357]
103342625  uncharacterized protein LOC103342625 [KO:K12456]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
pmum03050  Proteasome
KO pathway
ko04120   
LinkDB

DBGET integrated database retrieval system