KEGG   PATHWAY: pop03020
Entry
pop03020                    Pathway                                
Name
RNA polymerase - Populus trichocarpa (black cottonwood)
Class
Genetic Information Processing; Transcription
Pathway map
pop03020  RNA polymerase
pop03020

Other DBs
GO: 0000428
Organism
Populus trichocarpa (black cottonwood) [GN:pop]
Gene
4929645  rpoB; RNA polymerase beta subunit [KO:K03043] [EC:2.7.7.6]
112323823  DNA-directed RNA polymerase subunit beta [KO:K03043] [EC:2.7.7.6]
4929643  rpoC2; RNA polymerase beta'' subunit [KO:K03046] [EC:2.7.7.6]
4929644  rpoC1; RNA polymerase beta' subunit [KO:K03046] [EC:2.7.7.6]
127903912  DNA-directed RNA polymerase subunit beta' [KO:K03046] [EC:2.7.7.6]
127904137  DNA-directed RNA polymerase subunit beta'' [KO:K03046] [EC:2.7.7.6]
4929705  rpoA; RNA polymerase alpha subunit [KO:K03040] [EC:2.7.7.6]
7477407  DNA-directed RNA polymerase II subunit RPB2 [KO:K03010] [EC:2.7.7.6]
18099128  DNA-directed RNA polymerase II subunit RPB1 [KO:K03006] [EC:2.7.7.6]
7490057  DNA-directed RNA polymerases II, IV and V subunit 3 [KO:K03011]
7475018  DNA-directed RNA polymerases II, IV and V subunit 11 [KO:K03008]
7456265  DNA-directed RNA polymerase II subunit 4 [KO:K03012]
18105995  DNA-directed RNA polymerases IV and V subunit 4 [KO:K03012]
7477131  DNA-directed RNA polymerase II subunit 4 [KO:K03012]
7491348  DNA-directed RNA polymerase II subunit RPB7 [KO:K03015]
7471115  DNA-directed RNA polymerases II, IV and V subunit 9A [KO:K03017]
7475518  DNA-directed RNA polymerases II, IV and V subunit 9B [KO:K03017]
7464475  DNA-directed RNA polymerase III subunit 2 [KO:K03021] [EC:2.7.7.6]
7467656  DNA-directed RNA polymerase III subunit 1 isoform X1 [KO:K03018] [EC:2.7.7.6]
7485677  uncharacterized protein LOC7485677 [KO:K03020]
7485118  uncharacterized protein LOC7485118 [KO:K03027]
7474050  uncharacterized protein LOC7474050 isoform X1 [KO:K03023]
18100354  uncharacterized protein LOC18100354 [KO:K03026]
7465496  DNA-directed RNA polymerase III subunit rpc4 [KO:K03026]
18099314  uncharacterized protein LOC18099314 isoform X1 [KO:K03026]
7478022  uncharacterized protein LOC7478022 [KO:K14721]
18096721  uncharacterized protein LOC18096721 [KO:K03025]
7483552  uncharacterized protein LOC7483552 isoform X1 [KO:K03024]
7471998  uncharacterized protein LOC7471998 isoform X1 [KO:K03022]
7466866  uncharacterized protein LOC7466866 [KO:K25304]
7464273  uncharacterized protein LOC7464273 [KO:K03019]
7455807  DNA-directed RNA polymerase I subunit 2 [KO:K03002] [EC:2.7.7.6]
18099840  DNA-directed RNA polymerase I subunit 1 [KO:K02999] [EC:2.7.7.6]
7481723  uncharacterized protein LOC7481723 [KO:K03000]
18094841  DNA-directed RNA polymerase I subunit rpa49 [KO:K03005]
7487012  DNA-directed RNA polymerase V subunit 5C [KO:K03013]
18100431  DNA-directed RNA polymerases II and IV subunit 5A [KO:K03013]
7458931  DNA-directed RNA polymerase V subunit 5A isoform X1 [KO:K03013]
7484401  DNA-directed RNA polymerases II, IV and V subunit 6A isoform X1 [KO:K03014]
7474023  DNA-directed RNA polymerases II, IV and V subunit 6A [KO:K03014]
7482406  DNA-directed RNA polymerases II, IV and V subunit 8B isoform X2 [KO:K03016]
18104532  DNA-directed RNA polymerases II, IV and V subunit 8B [KO:K03016]
18104533  DNA-directed RNA polymerases II, IV and V subunit 8B [KO:K03016]
7454993  DNA-directed RNA polymerases II, IV and V subunit 12 [KO:K03009]
7491904  DNA-directed RNA polymerases I, II, and III subunit RPABC5 [KO:K03007]
18100279  DNA-directed RNA polymerases I, II, and III subunit RPABC5 [KO:K03007]
7490920  DNA-directed RNA polymerase IV subunit 1 isoform X2 [KO:K16250] [EC:2.7.7.6]
7460237  DNA-directed RNA polymerase V subunit 1 [KO:K16251] [EC:2.7.7.6]
7487005  DNA-directed RNA polymerase V subunit 1-like [KO:K16251] [EC:2.7.7.6]
7465421  DNA-directed RNA polymerases IV and V subunit 2 [KO:K16252] [EC:2.7.7.6]
7473447  DNA-directed RNA polymerase V subunit 7 [KO:K16253]
18102490  DNA-directed RNA polymerase V subunit 7 [KO:K16253]
7498035  DNA-directed RNA polymerase V subunit 7 [KO:K16253]
Reference
PMID:10499798
  Authors
Zhang G, Campbell EA, Minakhin L, Richter C, Severinov K, Darst SA.
  Title
Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.
  Journal
Cell 98:811-824 (1999)
DOI:10.1016/S0092-8674(00)81515-9
Reference
PMID:10784442
  Authors
Cramer P, Bushnell DA, Fu J, Gnatt AL, Maier-Davis B, Thompson NE, Burgess RR, Edwards AM, David PR, Kornberg RD.
  Title
Architecture of RNA polymerase II and implications for the transcription mechanism.
  Journal
Science 288:640-649 (2000)
DOI:10.1126/science.288.5466.640
Reference
PMID:19880312
  Authors
Hirata A, Murakami KS
  Title
Archaeal RNA polymerase.
  Journal
Curr Opin Struct Biol 19:724-31 (2009)
DOI:10.1016/j.sbi.2009.10.006
Reference
PMID:18573085
  Authors
Cramer P, Armache KJ, Baumli S, Benkert S, Brueckner F, Buchen C, Damsma GE, Dengl S, Geiger SR, Jasiak AJ, Jawhari A, Jennebach S, Kamenski T, Kettenberger H, Kuhn CD, Lehmann E, Leike K, Sydow JF, Vannini A
  Title
Structure of eukaryotic RNA polymerases.
  Journal
Annu Rev Biophys 37:337-52 (2008)
DOI:10.1146/annurev.biophys.37.032807.130008
Reference
PMID:31835031
  Authors
Hillen HS, Bartuli J, Grimm C, Dienemann C, Bedenk K, Szalay AA, Fischer U, Cramer P
  Title
Structural Basis of Poxvirus Transcription: Transcribing and Capping Vaccinia Complexes.
  Journal
Cell 179:1525-1536.e12 (2019)
DOI:10.1016/j.cell.2019.11.023
KO pathway
ko03020   
LinkDB

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