KEGG   PATHWAY: ppf00630
Entry
ppf00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pseudomonas putida F1
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppf00630  Glyoxylate and dicarboxylate metabolism
ppf00630

Module
ppf_M00012  Glyoxylate cycle [PATH:ppf00630]
ppf_M00621  Glycine cleavage system [PATH:ppf00630]
Other DBs
GO: 0046487 0043648
Organism
Pseudomonas putida F1 [GN:ppf]
Gene
Pput_1748  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
Pput_1428  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
Pput_3525  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
Pput_4567  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
Pput_0382  malate synthase [KO:K01638] [EC:2.3.3.9]
Pput_0687  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Pput_1660  citrate synthase [KO:K01647] [EC:2.3.3.1]
Pput_3627  aconitase [KO:K01681] [EC:4.2.1.3]
Pput_3431  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Pput_0621  3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
Pput_2009  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Pput_3690  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Pput_3523  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Pput_4498  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Pput_2403  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Pput_1337  MaoC domain protein dehydratase [KO:K17865] [EC:4.2.1.55]
Pput_2018  glycolate oxidase, subunit GlcD [KO:K00104] [EC:1.1.99.14]
Pput_2017  FAD linked oxidase domain protein [KO:K11472] [EC:1.1.99.14]
Pput_2016  protein of unknown function DUF224, cysteine-rich region domain protein [KO:K11473] [EC:1.1.99.14]
Pput_0514  Catalase [KO:K03781] [EC:1.11.1.6]
Pput_0132  Catalase [KO:K03781] [EC:1.11.1.6]
Pput_2803  Catalase domain protein [KO:K03781] [EC:1.11.1.6]
Pput_4462  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
Pput_0790  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein [KO:K00018] [EC:1.1.1.29]
Pput_0450  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
Pput_0109  HAD-superfamily hydrolase, subfamily IA, variant 1 [KO:K01091] [EC:3.1.3.18]
Pput_3807  HAD-superfamily hydrolase, subfamily IA, variant 3 [KO:K01091] [EC:3.1.3.18]
Pput_4920  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Pput_1342  glutamate--putrescine ligase [KO:K01915] [EC:6.3.1.2]
Pput_3559  glutamine synthetase, catalytic region [KO:K01915] [EC:6.3.1.2]
Pput_2566  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Pput_5091  glutamate--putrescine ligase [KO:K01915] [EC:6.3.1.2]
Pput_1455  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Pput_5090  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Pput_5208  glutamate--putrescine ligase [KO:K01915] [EC:6.3.1.2]
Pput_0344  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Pput_0702  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Pput_1025  glycine dehydrogenase (decarboxylating) alpha subunit [KO:K00281] [EC:1.4.4.2]
Pput_5099  glycine dehydrogenase (decarboxylating) beta subunit / glycine dehydrogenase (decarboxylating) alpha subunit [KO:K00281] [EC:1.4.4.2]
Pput_1023  glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
Pput_5101  aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
Pput_1450  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Pput_1667  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Pput_5274  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Pput_1026  glycine cleavage system H protein [KO:K02437]
Pput_5100  glycine cleavage system H protein [KO:K02437]
Pput_1572  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
Pput_1571  Hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
Pput_1570  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
Pput_2538  Glycerate kinase [KO:K00865] [EC:2.7.1.165]
Pput_1569  glycerate 2-kinase [KO:K11529] [EC:2.7.1.165]
Pput_1062  2-keto-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Pput_3551  formate dehydrogenase delta subunit [KO:K00126] [EC:1.17.1.9]
Pput_0523  formate dehydrogenase (quinone-dependent) catalytic subunit [KO:K00123] [EC:1.17.1.9]
Pput_3552  formate dehydrogenase alpha subunit [KO:K00123] [EC:1.17.1.9]
Pput_0522  formate dehydrogenase (quinone-dependent) catalytic subunit [KO:K00123] [EC:1.17.1.9]
Pput_0524  formate dehydrogenase (quinone-dependent) iron-sulfur subunit [KO:K00124]
Pput_3553  formate dehydrogenase beta subunit [KO:K00124]
Pput_3554  formate dehydrogenase gamma subunit [KO:K00127]
Pput_0525  formate dehydrogenase (quinone-dependent) cytochrome b subunit [KO:K00127]
Pput_0349  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Pput_4356  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Pput_4903  N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
ppf00010  Glycolysis / Gluconeogenesis
ppf00020  Citrate cycle (TCA cycle)
ppf00030  Pentose phosphate pathway
ppf00053  Ascorbate and aldarate metabolism
ppf00071  Fatty acid degradation
ppf00230  Purine metabolism
ppf00250  Alanine, aspartate and glutamate metabolism
ppf00260  Glycine, serine and threonine metabolism
ppf00620  Pyruvate metabolism
ppf00750  Vitamin B6 metabolism
ppf00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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