KEGG   PATHWAY: ppug00030
Entry
ppug00030                   Pathway                                
Name
Pentose phosphate pathway - Pungitius pungitius (ninespine stickleback)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppug00030  Pentose phosphate pathway
ppug00030

Module
ppug_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:ppug00030]
ppug_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:ppug00030]
ppug_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:ppug00030]
ppug_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:ppug00030]
Other DBs
GO: 0006098
Organism
Pungitius pungitius (ninespine stickleback) [GN:ppug]
Gene
119196390  glucose-6-phosphate isomerase-like [KO:K01810] [EC:5.3.1.9]
119225749  gpib; glucose-6-phosphate isomerase b [KO:K01810] [EC:5.3.1.9]
119222083  g6pd; glucose-6-phosphate 1-dehydrogenase isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
119223332  glucose-6-phosphate 1-dehydrogenase-like [KO:K00036] [EC:1.1.1.49 1.1.1.363]
119220003  pgls; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
119230052  h6pd; GDH/6PGL endoplasmic bifunctional protein [KO:K13937] [EC:1.1.1.47 3.1.1.31]
119222830  pgd; 6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
119229260  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
119222831  tktb; LOW QUALITY PROTEIN: transketolase-like protein 2 [KO:K00615] [EC:2.2.1.1]
119229700  transketolase-like [KO:K00615] [EC:2.2.1.1]
119223483  transketolase-like [KO:K00615] [EC:2.2.1.1]
119197241  taldo1; transaldolase [KO:K00616] [EC:2.2.1.2]
119228057  rpia; ribose-5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
119215040  shpk; sedoheptulokinase [KO:K11214] [EC:2.7.1.14]
119211464  dera; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
119227341  rbks; ribokinase isoform X1 [KO:K00852] [EC:2.7.1.15]
119203260  phosphoglucomutase-1-like [KO:K01835] [EC:5.4.2.2]
119217077  pgm1; phosphoglucomutase-1 [KO:K01835] [EC:5.4.2.2]
119217813  pgm2; phosphoglucomutase-2 [KO:K15779] [EC:5.4.2.2 5.4.2.7]
119199002  ribose-phosphate pyrophosphokinase 2 [KO:K00948] [EC:2.7.6.1]
119211137  prps1b; ribose-phosphate pyrophosphokinase 1 isoform X1 [KO:K00948] [EC:2.7.6.1]
119215390  rgn; regucalcin [KO:K01053] [EC:3.1.1.17]
119225642  probable gluconokinase isoform X1 [KO:K00851] [EC:2.7.1.12]
119229860  glyctk; glycerate kinase [KO:K11529] [EC:2.7.1.165]
119219981  fructose-bisphosphate aldolase A-like [KO:K01623] [EC:4.1.2.13]
119215450  aldocb; fructose-bisphosphate aldolase C-B [KO:K01623] [EC:4.1.2.13]
119210193  aldob; fructose-bisphosphate aldolase B [KO:K01623] [EC:4.1.2.13]
119212657  aldoab; aldolase a, fructose-bisphosphate, b [KO:K01623] [EC:4.1.2.13]
119218769  aldoca; fructose-bisphosphate aldolase C-A [KO:K01623] [EC:4.1.2.13]
119227055  fbp1b; fructose-1,6-bisphosphatase 1b [KO:K03841] [EC:3.1.3.11]
119224902  fbp1a; fructose-1,6-bisphosphatase 1a [KO:K03841] [EC:3.1.3.11]
119224904  fbp2; fructose-1,6-bisphosphatase isozyme 2 [KO:K03841] [EC:3.1.3.11]
119198607  pfkpa; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 [KO:K00850] [EC:2.7.1.11]
119194308  pfkmb; phosphofructokinase, muscle b [KO:K00850] [EC:2.7.1.11]
119228672  pfkla; ATP-dependent 6-phosphofructokinase, liver type [KO:K00850] [EC:2.7.1.11]
119209679  ATP-dependent 6-phosphofructokinase, platelet type-like isoform X1 [KO:K00850] [EC:2.7.1.11]
119222351  ATP-dependent 6-phosphofructokinase, muscle type-like [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
ppug00010  Glycolysis / Gluconeogenesis
ppug00040  Pentose and glucuronate interconversions
ppug00052  Galactose metabolism
ppug00230  Purine metabolism
ppug00240  Pyrimidine metabolism
ppug00340  Histidine metabolism
ppug00630  Glyoxylate and dicarboxylate metabolism
ppug00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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