KEGG   PATHWAY: pseq00920
Entry
pseq00920                   Pathway                                
Name
Sulfur metabolism - Pseudonocardia sp. EC080610-09
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
pseq00920  Sulfur metabolism
pseq00920

Other DBs
GO: 0006790
Organism
Pseudonocardia sp. EC080610-09 [GN:pseq]
Gene
AD006_29740  glycine/betaine ABC transporter substrate-binding protein [KO:K15551]
AD006_29735  ABC transporter permease [KO:K15552]
AD006_29745  ABC transporter [KO:K10831] [EC:7.6.2.7]
AD006_23745  taurine dioxygenase [KO:K03119] [EC:1.14.11.17]
AD006_29715  ABC transporter substrate-binding protein [KO:K15553]
AD006_14150  ABC transporter substrate-binding protein [KO:K15553]
AD006_14300  aliphatic sulfonate ABC transporter substrate-binding protein [KO:K15553]
AD006_28450  hypothetical protein [KO:K15553]
AD006_29710  hypothetical protein [KO:K15554]
AD006_14160  ABC transporter permease [KO:K15554]
AD006_14325  ABC transporter permease [KO:K15554]
AD006_14330  sulfate ABC transporter permease [KO:K15554]
AD006_28440  hypothetical protein [KO:K15554]
AD006_29720  ABC transporter [KO:K15555] [EC:7.6.2.14]
AD006_14155  sulfonate ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
AD006_14320  sulfonate ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
AD006_28445  nitrate ABC transporter ATPase [KO:K15555] [EC:7.6.2.14]
AD006_14335  sulfate ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
AD006_29830  alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
AD006_30730  luciferase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
AD006_14145  alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
AD006_14290  alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
AD006_14315  alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
AD006_22350  NADPH-dependent FMN reductase [KO:K00299] [EC:1.5.1.38]
AD006_15095  NADPH-dependent FMN reductase [KO:K00299] [EC:1.5.1.38]
AD006_08255  NADPH-dependent FMN reductase [KO:K00299] [EC:1.5.1.38]
AD006_13705  sulfate adenylyltransferase [KO:K00956] [EC:2.7.7.4]
AD006_13710  sulfate adenylyltransferase [KO:K00957] [EC:2.7.7.4]
AD006_25865  hypothetical protein [KO:K06881] [EC:3.1.3.7 3.1.13.3]
AD006_13715  phosphoadenosine phosphosulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
AD006_12410  CysJ [KO:K00380] [EC:1.8.1.2]
AD006_12965  reductase [KO:K00380] [EC:1.8.1.2]
AD006_13725  sulfite reductase [KO:K00392] [EC:1.8.7.1]
AD006_29790  hypothetical protein [KO:K01011] [EC:2.8.1.1 2.8.1.2]
AD006_29840  thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
AD006_03390  thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
AD006_10115  thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
AD006_23520  3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
AD006_27505  cysteine synthase [KO:K01738] [EC:2.5.1.47]
AD006_25930  homoserine acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
AD006_10235  hypothetical protein [KO:K00641] [EC:2.3.1.31 2.3.1.46]
AD006_21960  hypothetical protein [KO:K00641] [EC:2.3.1.31 2.3.1.46]
AD006_13465  hypothetical protein [KO:K00641] [EC:2.3.1.31 2.3.1.46]
AD006_01630  cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]
AD006_11615  selenium-binding protein [KO:K17285] [EC:1.8.3.4]
AD006_27320  alkanesulfonate monooxygenase [KO:K17228] [EC:1.14.14.35]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
pseq00260  Glycine, serine and threonine metabolism
pseq00270  Cysteine and methionine metabolism
pseq00680  Methane metabolism
KO pathway
ko00920   
LinkDB

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