KEGG   PATHWAY: psom04712
Entry
psom04712                   Pathway                                
Name
Circadian rhythm - plant - Papaver somniferum (opium poppy)
Description
The circadian system is an endogenous rhythm with the period of about 24 hours to provide temporal organization of biological activity. In Arabidopsis the circadian oscillator at the core of this system is composed of the interlocked feedback loop formed by the major transcriptional factors CCA1 (circadian clock associated), LHY (late elongated hypocotyl) and TOC1 (timing of cab), a pseudo response regulator (PRR). The morning-expressed CCA1/LHY Myb transcription factors suppress TOC1 expression by binding to its promoter. Moreover, CCA1/LHY activates the expression of PRR7/9 in the morning and then PRR7/9 repress the transcription of CCA1/LHY during the rest of the day. By contrast, the evening-expressed TOC1 activates the expression of CCA1/LHY.
Class
Organismal Systems; Environmental adaptation
Pathway map
psom04712  Circadian rhythm - plant
psom04712

Other DBs
GO: 0007623
Organism
Papaver somniferum (opium poppy) [GN:psom]
Gene
113333270  phytochrome B-like [KO:K12121]
113346901  phytochrome B-like [KO:K12121]
113334756  phytochrome A1-like [KO:K12120]
113335758  phytochrome A1-like isoform X1 [KO:K12120]
113341761  phytochrome A1-like [KO:K12120]
113358059  phytochrome A1-like [KO:K12120]
113334522  transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X1 [KO:K12126]
113358034  transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X1 [KO:K12126]
113348028  ELF3-like protein 2 [KO:K12125]
113352118  protein HEADING DATE 3B-like [KO:K12125]
113343832  two-component response regulator-like PRR37 [KO:K12129]
113322859  two-component response regulator-like PRR37 [KO:K12129]
113309868  two-component response regulator-like PRR95 isoform X1 [KO:K12130]
113321011  two-component response regulator-like PRR95 isoform X1 [KO:K12130]
113301615  two-component response regulator-like APRR9 [KO:K12130]
113297645  two-component response regulator-like APRR9 [KO:K12130]
113301841  protein LHY-like isoform X1 [KO:K12133]
113297638  protein LHY-like isoform X1 [KO:K12133]
113288610  casein kinase II subunit alpha-2-like [KO:K03097] [EC:2.7.11.1]
113283456  casein kinase II subunit alpha-2 [KO:K03097] [EC:2.7.11.1]
113283474  casein kinase II subunit alpha-like [KO:K03097] [EC:2.7.11.1]
113291196  casein kinase II subunit alpha-4, chloroplastic-like [KO:K03097] [EC:2.7.11.1]
113313200  casein kinase II subunit alpha-like [KO:K03097] [EC:2.7.11.1]
113287676  casein kinase II subunit alpha-2-like [KO:K03097] [EC:2.7.11.1]
113356639  casein kinase II subunit alpha-2-like [KO:K03097] [EC:2.7.11.1]
113356660  casein kinase II subunit alpha-like [KO:K03097] [EC:2.7.11.1]
113271451  casein kinase II subunit beta-3-like [KO:K03115]
113321833  putative casein kinase II subunit beta-4 [KO:K03115]
113297300  casein kinase II subunit beta-1 [KO:K03115]
113302605  casein kinase II subunit beta-1-like [KO:K03115]
113330007  putative casein kinase II subunit beta-4 [KO:K03115]
113330009  putative casein kinase II subunit beta-4 [KO:K03115]
113281277  putative casein kinase II subunit beta-4 [KO:K03115]
113284445  transcription factor TCP21-like [KO:K16221]
113299589  transcription factor TCP7-like [KO:K16221]
113303376  transcription factor TCP7-like [KO:K16221]
113355590  transcription factor TCP21-like [KO:K16221]
113337419  two-component response regulator-like APRR1 [KO:K12127]
113279114  two-component response regulator-like PRR1 [KO:K12127]
113300314  two-component response regulator-like APRR1 [KO:K12127]
113275899  two-component response regulator-like PRR1 [KO:K12127]
113299263  adagio protein 1-like [KO:K12115]
113358343  adagio protein 1-like [KO:K12115]
113271507  chalcone synthase-like [KO:K00660] [EC:2.3.1.74]
113271508  chalcone synthase-like [KO:K00660] [EC:2.3.1.74]
113281217  chalcone synthase-like [KO:K00660] [EC:2.3.1.74]
113345230  chalcone synthase-like [KO:K00660] [EC:2.3.1.74]
113349173  chalcone synthase [KO:K00660] [EC:2.3.1.74]
113360844  chalcone synthase-like [KO:K00660] [EC:2.3.1.74]
113348195  chalcone synthase-like [KO:K00660] [EC:2.3.1.74]
113331847  cryptochrome-1-like [KO:K12118]
113347363  cryptochrome-1 isoform X1 [KO:K12118]
113317529  cryptochrome-1-like [KO:K12119]
113349935  cryptochrome-1-like [KO:K12119]
113304459  WD repeat-containing protein RUP2-like [KO:K10143] [EC:2.3.2.27]
113288046  E3 ubiquitin-protein ligase COP1-like [KO:K10143] [EC:2.3.2.27]
113303769  E3 ubiquitin-protein ligase COP1-like [KO:K10143] [EC:2.3.2.27]
113274915  WD repeat-containing protein RUP2-like [KO:K10143] [EC:2.3.2.27]
113284055  protein HEADING DATE 3A-like [KO:K16223]
113284056  protein HEADING DATE 3A-like [KO:K16223]
113316021  protein HEADING DATE 3A-like [KO:K16223]
113316039  protein HEADING DATE 3A-like [KO:K16223]
113331688  protein HEADING DATE 3A-like [KO:K16223]
113322863  protein SUPPRESSOR OF PHYA-105 1-like isoform X1 [KO:K16240]
113298988  protein SUPPRESSOR OF PHYA-105 1-like [KO:K16240]
113340187  protein SUPPRESSOR OF PHYA-105 1-like [KO:K16240]
113358452  protein SUPPRESSOR OF PHYA-105 1-like [KO:K16240]
113306951  protein SPA1-RELATED 4-like [KO:K26557]
113287622  protein SPA1-RELATED 4-like [KO:K26557]
113347075  transcription factor HY5-like [KO:K16241]
113333298  transcription factor HY5-like [KO:K16241]
113340901  transcription factor HY5-like [KO:K16241]
113355721  transcription factor HY5-like [KO:K16241]
Reference
PMID:11710980
  Authors
McWatters HG, Roden LC, Staiger D.
  Title
Picking out parallels: plant circadian clocks in context.
  Journal
Philos Trans R Soc Lond B Biol Sci 356:1735-43 (2001)
DOI:10.1098/rstb.2001.0936
Reference
PMID:11597501
  Authors
Yanovsky MJ, Kay SA.
  Title
Signaling networks in the plant circadian system.
  Journal
Curr Opin Plant Biol 4:429-35 (2001)
DOI:10.1016/S1369-5266(00)00196-5
Reference
PMID:10792828
  Authors
Kim L, Kircher S, Toth R, Adam E, Schafer E, Nagy F.
  Title
Light-induced nuclear import of phytochrome-A:GFP fusion proteins is differentially regulated in transgenic tobacco and Arabidopsis.
  Journal
Plant J 22:125-33 (2000)
DOI:10.1046/j.1365-313x.2000.00729.x
Reference
PMID:8953247
  Authors
Sakamoto K, Nagatani A.
  Title
Nuclear localization activity of phytochrome B.
  Journal
Plant J 10:859-68 (1996)
DOI:10.1046/j.1365-313X.1996.10050859.x
Reference
PMID:11402161
  Authors
Liu XL, Covington MF, Fankhauser C, Chory J, Wagner DR.
  Title
ELF3 encodes a circadian clock-regulated nuclear protein that functions in an Arabidopsis PHYB signal transduction pathway.
  Journal
Plant Cell 13:1293-304 (2001)
DOI:10.1105/TPC.000475
Reference
PMID:11069292
  Authors
Zhu Y, Tepperman JM, Fairchild CD, Quail PH.
  Title
Phytochrome B binds with greater apparent affinity than phytochrome A to the basic helix-loop-helix factor PIF3 in a reaction requiring the PAS domain of PIF3.
  Journal
Proc Natl Acad Sci U S A 97:13419-24 (2000)
DOI:10.1073/pnas.230433797
Reference
PMID:9845368
  Authors
Ni M, Tepperman JM, Quail PH.
  Title
PIF3, a phytochrome-interacting factor necessary for normal photoinduced signal transduction, is a novel basic helix-loop-helix protein.
  Journal
Cell 95:657-67 (1998)
DOI:10.1016/S0092-8674(00)81636-0
Reference
PMID:11743105
  Authors
Toth R, Kevei E, Hall A, Millar AJ, Nagy F, Kozma-Bognar L.
  Title
Circadian clock-regulated expression of phytochrome and cryptochrome genes in Arabidopsis.
  Journal
Plant Physiol 127:1607-16 (2001)
DOI:10.1104/pp.900010
Reference
PMID:11752379
  Authors
Schultz TF, Kiyosue T, Yanovsky M, Wada M, Kay SA.
  Title
A role for LKP2 in the circadian clock of Arabidopsis.
  Journal
Plant Cell 13:2659-70 (2001)
DOI:10.1105/tpc.010332
Reference
PMID:11260718
  Authors
Jarillo JA, Capel J, Tang RH, Yang HQ, Alonso JM, Ecker JR, Cashmore AR.
  Title
An Arabidopsis circadian clock component interacts with both CRY1 and phyB.
  Journal
Nature 410:487-90 (2001)
DOI:10.1038/35068589
Reference
PMID:11828029
  Authors
Matsushika A, Makino S, Kojima M, Yamashino T, Mizuno T.
  Title
The APRR1/TOC1 quintet implicated in circadian rhythms of Arabidopsis thaliana: II. Characterization with CCA1-overexpressing plants.
  Journal
Plant Cell Physiol 43:118-22 (2002)
DOI:10.1093/pcp/pcf006
Reference
PMID:10535927
  Authors
Sugano S, Andronis C, Ong MS, Green RM, Tobin EM.
  Title
The protein kinase CK2 is involved in regulation of circadian rhythms in Arabidopsis.
  Journal
Proc Natl Acad Sci U S A 96:12362-6 (1999)
DOI:10.1073/pnas.96.22.12362
Reference
PMID:11089975
  Authors
Mas P, Devlin PF, Panda S, Kay SA.
  Title
Functional interaction of phytochrome B and cryptochrome 2.
  Journal
Nature 408:207-11 (2000)
DOI:10.1038/35041583
Reference
PMID:9651577
  Authors
Ahmad M, Jarillo JA, Smirnova O, Cashmore AR.
  Title
The CRY1 blue light photoreceptor of Arabidopsis interacts with phytochrome A in vitro.
  Journal
Mol Cell 1:939-48 (1998)
DOI:10.1016/S1097-2765(00)80094-5
Reference
PMID:11486091
  Authors
Alabadi D, Oyama T, Yanovsky MJ, Harmon FG, Mas P, Kay SA.
  Title
Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock.
  Journal
Science 293:880-3 (2001)
DOI:10.1126/science.1061320
Reference
PMID:11148285
  Authors
Borevitz JO, Xia Y, Blount J, Dixon RA, Lamb C.
  Title
Activation tagging identifies a conserved MYB regulator of phenylpropanoid biosynthesis.
  Journal
Plant Cell 12:2383-2394 (2000)
DOI:10.1105/tpc.12.12.2383
Reference
PMID:12091722
  Authors
Murakami-Kojima M, Nakamichi N, Yamashino T, Mizuno T.
  Title
The APRR3 component of the clock-associated APRR1/TOC1 quintet is phosphorylated by a novel protein kinase belonging to the WNK family, the gene for which is also transcribed rhythmically in Arabidopsis thaliana.
  Journal
Plant Cell Physiol 43:675-83 (2002)
DOI:10.1093/pcp/pcf084
Reference
PMID:19386812
  Authors
Pan Y, Michael TP, Hudson ME, Kay SA, Chory J, Schuler MA
  Title
Cytochrome P450 monooxygenases as reporters for circadian-regulated pathways.
  Journal
Plant Physiol 150:858-78 (2009)
DOI:10.1104/pp.108.130757
Reference
PMID:11118138
  Authors
Harmer SL, Hogenesch JB, Straume M, Chang HS, Han B, Zhu T, Wang X, Kreps JA, Kay SA
  Title
Orchestrated transcription of key pathways in Arabidopsis by the circadian clock.
  Journal
Science 290:2110-3 (2000)
DOI:10.1126/science.290.5499.2110
Reference
PMID:12045273
  Authors
Mouradov A, Cremer F, Coupland G
  Title
Control of flowering time: interacting pathways as a basis for diversity.
  Journal
Plant Cell 14 Suppl:S111-30 (2002)
DOI:10.1105/tpc.001362
Reference
PMID:15568973
  Authors
Chen M, Chory J, Fankhauser C
  Title
Light signal transduction in higher plants.
  Journal
Annu Rev Genet 38:87-117 (2004)
DOI:10.1146/annurev.genet.38.072902.092259
Reference
PMID:16096959
  Authors
Mas P
  Title
Circadian clock signaling in Arabidopsis thaliana: from gene expression to physiology and development.
  Journal
Int J Dev Biol 49:491-500 (2005)
DOI:10.1387/ijdb.041968pm
Reference
PMID:17304247
  Authors
Jiao Y, Lau OS, Deng XW
  Title
Light-regulated transcriptional networks in higher plants.
  Journal
Nat Rev Genet 8:217-30 (2007)
DOI:10.1038/nrg2049
Reference
PMID:18444908
  Authors
Turck F, Fornara F, Coupland G
  Title
Regulation and identity of florigen: FLOWERING LOCUS T moves center stage.
  Journal
Annu Rev Plant Biol 59:573-94 (2008)
DOI:10.1146/annurev.arplant.59.032607.092755
Reference
PMID:19836294
  Authors
Imaizumi T
  Title
Arabidopsis circadian clock and photoperiodism: time to think about location.
  Journal
Curr Opin Plant Biol 13:83-9 (2010)
DOI:10.1016/j.pbi.2009.09.007
Reference
PMID:20459860
  Authors
McClung CR
  Title
A modern circadian clock in the common angiosperm ancestor of monocots and eudicots.
  Journal
BMC Biol 8:55 (2010)
DOI:10.1186/1741-7007-8-55
Reference
PMID:20809800
  Authors
Doherty CJ, Kay SA
  Title
Circadian control of global gene expression patterns.
  Journal
Annu Rev Genet 44:419-44 (2010)
DOI:10.1146/annurev-genet-102209-163432
Reference
PMID:20889330
  Authors
McClung CR, Gutierrez RA
  Title
Network news: prime time for systems biology of the plant circadian clock.
  Journal
Curr Opin Genet Dev 20:588-98 (2010)
DOI:10.1016/j.gde.2010.08.010
Reference
PMID:22190341
  Authors
Lu SX, Webb CJ, Knowles SM, Kim SH, Wang Z, Tobin EM
  Title
CCA1 and ELF3 Interact in the control of hypocotyl length and flowering time in Arabidopsis.
  Journal
Plant Physiol 158:1079-88 (2012)
DOI:10.1104/pp.111.189670
Reference
PMID:22705257
  Authors
Lau OS, Deng XW
  Title
The photomorphogenic repressors COP1 and DET1: 20 years later.
  Journal
Trends Plant Sci 17:584-93 (2012)
DOI:10.1016/j.tplants.2012.05.004
Related
pathway
psom00196  Photosynthesis - antenna proteins
KO pathway
ko04712   
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