KEGG   PATHWAY: psq03018
Entry
psq03018                    Pathway                                
Name
RNA degradation - Punctularia strigosozonata
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
psq03018  RNA degradation
psq03018

Other DBs
GO: 0006401
Organism
Punctularia strigosozonata [GN:psq]
Gene
PUNSTDRAFT_134327  scavenger mRNA decapping enzyme [KO:K12584] [EC:3.6.1.59]
PUNSTDRAFT_117746  hypothetical protein [KO:K07573]
PUNSTDRAFT_66135  exosome complex exonuclease rrp4 [KO:K03679]
PUNSTDRAFT_130962  hypothetical protein [KO:K03681]
PUNSTDRAFT_142893  hypothetical protein [KO:K12586]
PUNSTDRAFT_104997  ribosomal protein S5 domain 2-like protein [KO:K12587]
PUNSTDRAFT_138855  ribosomal protein S5 domain 2-like protein [KO:K12589]
PUNSTDRAFT_116225  hypothetical protein [KO:K11600]
PUNSTDRAFT_102893  hypothetical protein [KO:K12590]
PUNSTDRAFT_122838  ribosomal protein S5 domain 2-like protein [KO:K03678]
PUNSTDRAFT_146015  RNB-domain-containing protein [KO:K12585] [EC:3.1.13.-]
PUNSTDRAFT_97267  hypothetical protein [KO:K12591] [EC:3.1.13.-]
PUNSTDRAFT_140712  C1D-domain-containing protein [KO:K12592]
PUNSTDRAFT_71360  Nucleotidyltransferase [KO:K03514] [EC:2.7.7.19]
PUNSTDRAFT_100511  hypothetical protein [KO:K12597]
PUNSTDRAFT_54914  antiviral helicase [KO:K12598] [EC:5.6.2.6]
PUNSTDRAFT_140684  antiviral helicase [KO:K12599] [EC:5.6.2.6]
PUNSTDRAFT_118913  superkiller protein 3 SKI3 [KO:K12600]
PUNSTDRAFT_112798  WD repeat-containing protein 61 [KO:K12602]
PUNSTDRAFT_62694  glucose-repressible alcohol dehydrogenase transcriptional effector [KO:K12603] [EC:3.1.13.4]
PUNSTDRAFT_144231  CCR4-Not complex component [KO:K12604]
PUNSTDRAFT_141069  hypothetical protein [KO:K12605]
PUNSTDRAFT_84375  hypothetical protein [KO:K12580]
PUNSTDRAFT_121179  hypothetical protein [KO:K10643] [EC:2.3.2.27]
PUNSTDRAFT_35413  ribonuclease CAF1 [KO:K12581]
PUNSTDRAFT_73131  cell differentiation proteins Rcd1-like protein [KO:K12606]
PUNSTDRAFT_51337  P-loop containing nucleoside triphosphate hydrolase protein [KO:K12608]
PUNSTDRAFT_143337  hypothetical protein [KO:K12609]
PUNSTDRAFT_104944  polyadenylate binding protein [KO:K13126]
PUNSTDRAFT_52774  hypothetical protein [KO:K13126]
PUNSTDRAFT_70027  hypothetical protein [KO:K12571] [EC:3.1.13.4]
PUNSTDRAFT_106925  hypothetical protein [KO:K12572]
PUNSTDRAFT_129431  DCP2-domain-containing protein [KO:K12613] [EC:3.6.1.62]
PUNSTDRAFT_120764  DEAD-domain-containing protein [KO:K12614] [EC:5.6.2.7]
PUNSTDRAFT_54266  hypothetical protein [KO:K12617]
PUNSTDRAFT_63109  U6 snRNA-associated Sm-like protein LSm2 [KO:K12621]
PUNSTDRAFT_115179  Sm-like ribonucleo protein [KO:K12623]
PUNSTDRAFT_121303  like-Sm ribonucleo protein [KO:K12624]
PUNSTDRAFT_87894  LSM-domain-containing protein [KO:K12627]
PUNSTDRAFT_141433  enolase [KO:K01689] [EC:4.2.1.11]
PUNSTDRAFT_43988  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
PUNSTDRAFT_127289  heat shock protein [KO:K04043]
PUNSTDRAFT_93154  chaperonin GroL [KO:K04077] [EC:5.6.1.7]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
Related
pathway
psq03015  mRNA surveillance pathway
KO pathway
ko03018   
LinkDB

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