KEGG   PATHWAY: pstg00020
Entry
pstg00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Phreatobacter stygius
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pstg00020  Citrate cycle (TCA cycle)
pstg00020

Module
pstg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pstg00020]
pstg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pstg00020]
pstg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pstg00020]
pstg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pstg00020]
pstg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pstg00020]
Other DBs
GO: 0006099
Organism
Phreatobacter stygius [GN:pstg]
Gene
E8M01_12310  citrate synthase [KO:K01647] [EC:2.3.3.1]
E8M01_12315  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
E8M01_31860  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
E8M01_10435  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
E8M01_00710  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
E8M01_19040  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
E8M01_19035  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
E8M01_07115  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E8M01_30745  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E8M01_19015  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E8M01_18390  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
E8M01_18395  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
E8M01_11795  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
E8M01_11840  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
E8M01_19045  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
E8M01_11790  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
E8M01_11845  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
E8M01_19095  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
E8M01_17180  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
E8M01_19085  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
E8M01_19090  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
E8M01_01180  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
E8M01_30365  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
E8M01_30360  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
E8M01_20085  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
E8M01_19060  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
E8M01_09725  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
E8M01_13180  transketolase [KO:K00163] [EC:1.2.4.1]
E8M01_30710  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
E8M01_30720  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
E8M01_30730  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pstg00010  Glycolysis / Gluconeogenesis
pstg00053  Ascorbate and aldarate metabolism
pstg00061  Fatty acid biosynthesis
pstg00071  Fatty acid degradation
pstg00190  Oxidative phosphorylation
pstg00220  Arginine biosynthesis
pstg00250  Alanine, aspartate and glutamate metabolism
pstg00280  Valine, leucine and isoleucine degradation
pstg00350  Tyrosine metabolism
pstg00470  D-Amino acid metabolism
pstg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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