KEGG   PATHWAY: psub03030
Entry
psub03030                   Pathway                                
Name
DNA replication - Pelolinea submarina
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
psub03030  DNA replication
psub03030

Organism
Pelolinea submarina [GN:psub]
Gene
Pelsub_P0027  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
Pelsub_P2585  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
Pelsub_P0353  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
Pelsub_P0282  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
Pelsub_P0255  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
Pelsub_P1097  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
Pelsub_P0094  DNA primase [KO:K02316] [EC:2.7.7.101]
Pelsub_P0166  single-strand DNA-binding protein [KO:K03111]
Pelsub_P0299  single-strand DNA-binding protein [KO:K03111]
Pelsub_P1228  ribonuclease HI [KO:K03469] [EC:3.1.26.4]
Pelsub_P2516  ribonuclease HI [KO:K03469] [EC:3.1.26.4]
Pelsub_P0324  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
Pelsub_P1093  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
Pelsub_P1677  DNA ligase (NAD+) [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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