KEGG   PATHWAY: pve00260
Entry
pve00260                    Pathway                                
Name
Glycine, serine and threonine metabolism - Pandoraea vervacti
Description
Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].
Class
Metabolism; Amino acid metabolism
Pathway map
pve00260  Glycine, serine and threonine metabolism
pve00260

Module
pve_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:pve00260]
pve_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:pve00260]
pve_M00621  Glycine cleavage system [PATH:pve00260]
Other DBs
GO: 0006544 0006563 0070178 0006566
Organism
Pandoraea vervacti [GN:pve]
Gene
UC34_09595  aspartate kinase [KO:K00928] [EC:2.7.2.4]
UC34_09400  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
UC34_10825  homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]
UC34_16045  homoserine kinase [KO:K02204] [EC:2.7.1.39]
UC34_02685  hypothetical protein [KO:K01733] [EC:4.2.3.1]
UC34_10830  threonine synthase [KO:K01733] [EC:4.2.3.1]
UC34_16085  threonine aldolase [KO:K01620] [EC:4.1.2.48]
UC34_17155  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
UC34_17495  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
UC34_03500  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
UC34_02080  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
UC34_05125  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
UC34_04565  bifunctional glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
UC34_20335  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
UC34_15765  glycerate kinase [KO:K00865] [EC:2.7.1.165]
UC34_02615  gpmA; phosphoglyceromutase [KO:K01834] [EC:5.4.2.11]
UC34_04535  hypothetical protein [KO:K15634] [EC:5.4.2.11]
UC34_00795  3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
UC34_06320  phosphoserine transaminase [KO:K00831] [EC:2.6.1.52]
UC34_14290  phosphoserine phosphatase SerB [KO:K01079] [EC:3.1.3.3]
UC34_21055  glycine C-acetyltransferase [KO:K00639] [EC:2.3.1.29]
UC34_23760  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
UC34_23770  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
UC34_09945  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
UC34_14525  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
UC34_23765  glycine cleavage system protein H [KO:K02437]
UC34_02690  hypothetical protein [KO:K00273] [EC:1.4.3.3]
UC34_15105  CDP-diacylglycerol--serine O-phosphatidyltransferase [KO:K17103] [EC:2.7.8.8]
UC34_08020  aldehyde dehydrogenase [KO:K00130] [EC:1.2.1.8]
UC34_04500  methionine gamma-lyase [KO:K01758] [EC:4.4.1.1]
UC34_23755  L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]
UC34_14260  serine/threonine dehydratase [KO:K01754] [EC:4.3.1.19]
UC34_04295  PLP-dependent threonine dehydratase [KO:K01754] [EC:4.3.1.19]
UC34_04255  amino acid deaminase [KO:K01753] [EC:4.3.1.18]
UC34_15390  aspartate/glutamate racemase [KO:K25316] [EC:5.1.1.10]
UC34_09440  tryptophan synthase subunit alpha [KO:K01695] [EC:4.2.1.20]
UC34_09430  tryptophan synthase subunit beta [KO:K01696] [EC:4.2.1.20]
UC34_18660  succinylglutamate desuccinylase [KO:K15784] [EC:3.5.1.125]
UC34_05105  hypothetical protein [KO:K15785] [EC:2.6.1.76]
UC34_05110  NAD-dependent succinate-semialdehyde dehydrogenase [KO:K15786] [EC:1.2.1.-]
Compound
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00037  Glycine
C00048  Glyoxylate
C00049  L-Aspartate
C00065  L-Serine
C00078  L-Tryptophan
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00109  2-Oxobutanoate
C00114  Choline
C00143  5,10-Methylenetetrahydrofolate
C00168  Hydroxypyruvate
C00188  L-Threonine
C00197  3-Phospho-D-glycerate
C00213  Sarcosine
C00258  D-Glycerate
C00263  L-Homoserine
C00300  Creatine
C00430  5-Aminolevulinate
C00441  L-Aspartate 4-semialdehyde
C00546  Methylglyoxal
C00576  Betaine aldehyde
C00581  Guanidinoacetate
C00631  2-Phospho-D-glycerate
C00719  Betaine
C00740  D-Serine
C00986  1,3-Diaminopropane
C01005  O-Phospho-L-serine
C01026  N,N-Dimethylglycine
C01102  O-Phospho-L-homoserine
C01242  [Protein]-S8-aminomethyldihydrolipoyllysine
C01888  Aminoacetone
C02051  Lipoylprotein
C02291  L-Cystathionine
C02737  Phosphatidylserine
C02972  Dihydrolipoylprotein
C03082  4-Phospho-L-aspartate
C03194  (R)-1-Aminopropan-2-ol
C03232  3-Phosphonooxypyruvate
C03283  L-2,4-Diaminobutanoate
C03508  L-2-Amino-3-oxobutanoic acid
C05519  L-Allothreonine
C06231  Ectoine
C06442  N(gamma)-Acetyldiaminobutyrate
C16432  5-Hydroxyectoine
C19929  N(alpha)-Acetyl-L-2,4-diaminobutyrate
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
PMID:11823218
  Authors
Kuhlmann AU, Bremer E.
  Title
Osmotically regulated synthesis of the compatible solute ectoine in Bacillus pasteurii and related Bacillus spp.
  Journal
Appl Environ Microbiol 68:772-83 (2002)
DOI:10.1128/AEM.68.2.772-783.2002
Reference
PMID:10473374
  Authors
Canovas D, Borges N, Vargas C, Ventosa A, Nieto JJ, Santos H.
  Title
Role of Ngamma-acetyldiaminobutyrate as an enzyme stabilizer and an intermediate in the biosynthesis of hydroxyectoine.
  Journal
Appl Environ Microbiol 65:3774-9 (1999)
DOI:10.1128/AEM.65.9.3774-3779.1999
Reference
PMID:17636255
  Authors
Bursy J, Pierik AJ, Pica N, Bremer E.
  Title
Osmotically induced synthesis of the compatible solute hydroxyectoine is mediated by an evolutionarily conserved ectoine hydroxylase.
  Journal
J Biol Chem 282:31147-55 (2007)
DOI:10.1074/jbc.M704023200
Reference
PMID:16707670
  Authors
Garcia-Estepa R, Argandona M, Reina-Bueno M, Capote N, Iglesias-Guerra F, Nieto JJ, Vargas C.
  Title
The ectD gene, which is involved in the synthesis of the compatible solute hydroxyectoine, is essential for thermoprotection of the halophilic bacterium Chromohalobacter salexigens.
  Journal
J Bacteriol 188:3774-84 (2006)
DOI:10.1128/JB.00136-06
Reference
PMID:15470257
  Authors
Arevalo-Rodriguez M, Pan X, Boeke JD, Heitman J
  Title
FKBP12 controls aspartate pathway flux in Saccharomyces cerevisiae to prevent toxic intermediate accumulation.
  Journal
Eukaryot Cell 3:1287-96 (2004)
DOI:10.1128/EC.3.5.1287-1296.2004
Reference
PMID:7639721
  Authors
Rees WD, Hay SM
  Title
The biosynthesis of threonine by mammalian cells: expression of a complete bacterial biosynthetic pathway in an animal cell.
  Journal
Biochem J 309 ( Pt 3):999-1007 (1995)
DOI:10.1042/bj3090999
Reference
PMID:11341914
  Authors
Jacques SL, Nieman C, Bareich D, Broadhead G, Kinach R, Honek JF, Wright GD
  Title
Characterization of yeast homoserine dehydrogenase, an antifungal target: the invariant histidine 309 is important for enzyme integrity.
  Journal
Biochim Biophys Acta 1544:28-41 (2001)
DOI:10.1016/S0167-4838(00)00203-X
Reference
PMID:15520012
  Authors
Chen X, Jhee KH, Kruger WD
  Title
Production of the neuromodulator H2S by cystathionine beta-synthase via the condensation of cysteine and homocysteine.
  Journal
J Biol Chem 279:52082-6 (2004)
DOI:10.1074/jbc.C400481200
Related
pathway
pve00010  Glycolysis / Gluconeogenesis
pve00020  Citrate cycle (TCA cycle)
pve00230  Purine metabolism
pve00250  Alanine, aspartate and glutamate metabolism
pve00270  Cysteine and methionine metabolism
pve00290  Valine, leucine and isoleucine biosynthesis
pve00300  Lysine biosynthesis
pve00330  Arginine and proline metabolism
pve00460  Cyanoamino acid metabolism
pve00470  D-Amino acid metabolism
pve00564  Glycerophospholipid metabolism
pve00620  Pyruvate metabolism
pve00630  Glyoxylate and dicarboxylate metabolism
pve00640  Propanoate metabolism
pve00680  Methane metabolism
pve00860  Porphyrin metabolism
pve00920  Sulfur metabolism
KO pathway
ko00260   
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