KEGG   PATHWAY: pxb03008
Entry
pxb03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Pyrus x bretschneideri (Chinese white pear)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
pxb03008  Ribosome biogenesis in eukaryotes
pxb03008

Organism
Pyrus x bretschneideri (Chinese white pear) [GN:pxb]
Gene
103939911  putative casein kinase II subunit beta-4 [KO:K03115]
103939912  putative casein kinase II subunit beta-4 [KO:K03115]
103953812  putative casein kinase II subunit beta-4 [KO:K03115]
103953815  casein kinase II subunit beta-1-like [KO:K03115]
103961067  casein kinase II subunit beta-1 isoform X1 [KO:K03115]
103952845  casein kinase II subunit beta-1-like [KO:K03115]
103964204  putative casein kinase II subunit beta-4 [KO:K03115]
103929359  casein kinase II subunit alpha-like isoform X1 [KO:K03097] [EC:2.7.11.1]
103941366  casein kinase II subunit alpha-like [KO:K03097] [EC:2.7.11.1]
103950921  casein kinase II subunit alpha-like [KO:K03097] [EC:2.7.11.1]
103934757  casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
103945290  LOW QUALITY PROTEIN: casein kinase II subunit alpha-1-like [KO:K03097] [EC:2.7.11.1]
103967746  casein kinase II subunit alpha isoform X1 [KO:K03097] [EC:2.7.11.1]
103939207  nucleolar protein 6-like isoform X1 [KO:K14544]
103960835  LOW QUALITY PROTEIN: nucleolar protein 6-like [KO:K14544]
103932819  nucleolar protein 6-like isoform X1 [KO:K14544]
103962700  cylicin-1-like isoform X1 [KO:K14545]
103966822  eukaryotic translation initiation factor 5B-like isoform X1 [KO:K14545]
103937945  uncharacterized protein LOC103937945 [KO:K14546]
103959362  WD repeat-containing protein 43-like [KO:K14546]
103951302  U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
103963989  U3 small nucleolar RNA-associated protein 4-like [KO:K14548]
103942152  U3 small nucleolar RNA-associated protein 15-like [KO:K14549]
103938785  protein SLOW WALKER 1 [KO:K14549]
103961917  uncharacterized protein At3g06530-like [KO:K14550]
103959794  uncharacterized protein At3g06530-like [KO:K14550]
103960593  WD repeat-containing protein 75-like isoform X1 [KO:K14552]
103960594  WD repeat-containing protein 75-like isoform X1 [KO:K14552]
103946000  U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
103957318  U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
103952203  U3 small nucleolar RNA-associated protein 21 homolog [KO:K14554]
103959407  U3 small nucleolar RNA-associated protein 21 homolog [KO:K14554]
103943289  transducin beta-like protein 3 [KO:K14555]
103951501  transducin beta-like protein 3 [KO:K14555]
103951335  U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
103963986  U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
103953002  U3 small nucleolar ribonucleoprotein protein MPP10 isoform X1 [KO:K14559]
103966793  U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
103931671  U3 small nucleolar ribonucleoprotein protein IMP4-like [KO:K14561]
103965259  U3 small nucleolar ribonucleoprotein protein IMP4-like [KO:K14561]
103965392  probable mediator of RNA polymerase II transcription subunit 36b [KO:K14563] [EC:2.1.1.-]
103958230  mediator of RNA polymerase II transcription subunit 36a-like [KO:K14563] [EC:2.1.1.-]
103950033  nucleolar protein 56-like [KO:K14564]
103938231  nucleolar protein 56-like [KO:K14564]
103929145  nucleolar protein 56-like [KO:K14564]
103934040  probable nucleolar protein 5-2 [KO:K14565]
103954459  probable nucleolar protein 5-2 [KO:K14565]
103936719  NHP2-like protein 1 [KO:K12845]
103958302  NHP2-like protein 1 isoform X2 [KO:K12845]
103933276  H/ACA ribonucleoprotein complex subunit 4-like [KO:K11131] [EC:5.4.99.-]
103961078  H/ACA ribonucleoprotein complex subunit 4-like isoform X1 [KO:K11131] [EC:5.4.99.-]
103959067  H/ACA ribonucleoprotein complex subunit 4-like [KO:K11131] [EC:5.4.99.-]
103938233  H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
103930140  H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
103940991  putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 isoform X1 [KO:K11128]
103928775  H/ACA ribonucleoprotein complex subunit 3-like protein [KO:K11130]
103958867  H/ACA ribonucleoprotein complex subunit 3-like protein [KO:K11130]
103965869  rRNA-processing protein FCF1 homolog isoform X1 [KO:K14566]
103928385  U3 small nucleolar RNA-associated protein 14-like [KO:K14567]
103928416  uncharacterized protein C57A7.06-like [KO:K14567]
103940418  uncharacterized protein C57A7.06-like [KO:K14567]
103945562  ribosomal RNA small subunit methyltransferase NEP1-like [KO:K14568] [EC:2.1.1.260]
103931776  ribosomal RNA small subunit methyltransferase nep-1-like [KO:K14568] [EC:2.1.1.260]
103945632  ribosomal RNA small subunit methyltransferase NEP1-like [KO:K14568] [EC:2.1.1.260]
103932168  ribosomal RNA small subunit methyltransferase nep-1-like [KO:K14568] [EC:2.1.1.260]
103965430  ribosomal RNA small subunit methyltransferase NEP1-like [KO:K14568] [EC:2.1.1.260]
108867117  ribosomal RNA small subunit methyltransferase NEP1-like [KO:K14568] [EC:2.1.1.260]
103945563  ribosomal RNA small subunit methyltransferase NEP1-like [KO:K14568] [EC:2.1.1.260]
103937892  ribosomal RNA small subunit methyltransferase nep-1-like [KO:K14568] [EC:2.1.1.260]
103955458  ribosomal RNA small subunit methyltransferase NEP1-like [KO:K14568] [EC:2.1.1.260]
103941741  ribosome biogenesis protein BMS1-like [KO:K14569]
103960735  ribosome biogenesis protein BMS1 homolog isoform X2 [KO:K14569]
103963683  ribosome biogenesis protein BMS1 homolog isoform X1 [KO:K14569]
103959211  ribosome biogenesis protein bms1-like [KO:K14569]
103959212  ribosome biogenesis protein bms1-like [KO:K14569]
103931682  RNA cytidine acetyltransferase 1-like [KO:K14521] [EC:2.3.1.-]
103965238  RNA cytidine acetyltransferase 1-like [KO:K14521] [EC:2.3.1.-]
103945141  probable RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
103948001  probable RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
103956881  uncharacterized protein C05D11.9-like isoform X1 [KO:K01164] [EC:3.1.26.5]
103956891  uncharacterized protein C05D11.9-like isoform X1 [KO:K01164] [EC:3.1.26.5]
103934448  ribonuclease P protein subunit p29 isoform X2 [KO:K03538] [EC:3.1.26.5]
103942714  ribonuclease P protein subunit p29-like [KO:K03538] [EC:3.1.26.5]
103951548  probable ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
103943501  probable ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
103945667  uncharacterized protein LOC103945667 [KO:K03539] [EC:3.1.26.5]
103951127  small RNA degrading nuclease 5-like [KO:K14570] [EC:3.1.-.-]
103961593  small RNA degrading nuclease 3-like [KO:K14570] [EC:3.1.-.-]
103957127  small RNA degrading nuclease 3 [KO:K14570] [EC:3.1.-.-]
103957896  small RNA degrading nuclease 5-like [KO:K14570] [EC:3.1.-.-]
103946164  oligoribonuclease isoform X1 [KO:K13288] [EC:3.1.-.-]
103927935  5'-3' exoribonuclease 3 isoform X1 [KO:K12619] [EC:3.1.13.-]
103929741  nucleolar GTP-binding protein 1-like [KO:K06943]
103967201  nucleolar GTP-binding protein 1-like [KO:K06943]
103967184  nucleolar GTP-binding protein 1-like [KO:K06943]
103965720  nucleolar GTP-binding protein 1-like [KO:K06943]
103932039  nucleolar GTP-binding protein 1-like [KO:K06943]
103965497  nucleolar GTP-binding protein 1-like isoform X1 [KO:K06943]
103967444  nucleolar GTP-binding protein 1-like [KO:K06943]
103960658  guanine nucleotide-binding protein-like NSN1 [KO:K14538]
103948523  cell division control protein 48 homolog C-like [KO:K14571]
103934606  cell division control protein 48 homolog C-like isoform X1 [KO:K14571]
103963829  midasin-like [KO:K14572]
103963852  midasin-like [KO:K14572]
103957906  midasin-like [KO:K14572]
103939481  RNA-binding protein 28-like isoform X1 [KO:K14573]
103962053  RNA-binding protein 28-like [KO:K14573]
103927561  GTP-binding nuclear protein Ran1A-like [KO:K07936]
103927562  GTP-binding nuclear protein Ran-3-like [KO:K07936]
103927564  GTP-binding nuclear protein Ran1B-like [KO:K07936]
103942502  GTP-binding nuclear protein Ran [KO:K07936]
103937099  GTP-binding nuclear protein Ran-3-like [KO:K07936]
103937100  GTP-binding nuclear protein Ran1A-like [KO:K07936]
103939803  GTP-binding nuclear protein Ran-3 [KO:K07936]
103943305  protein EXPORTIN 1A isoform X1 [KO:K14290]
103951515  protein EXPORTIN 1A-like isoform X1 [KO:K14290]
103963520  60S ribosomal export protein NMD3-like [KO:K07562]
103965066  60S ribosomal export protein NMD3-like [KO:K07562]
103951162  eukaryotic translation initiation factor 6-2-like [KO:K03264]
103939744  eukaryotic translation initiation factor 6-2 [KO:K03264]
103957892  ribosome maturation protein SBDS [KO:K14574]
103940959  elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
103927905  GTPase LSG1-2-like [KO:K14539] [EC:3.6.1.-]
103934694  GTPase LSG1-2-like [KO:K14539] [EC:3.6.1.-]
103964600  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
103963119  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
103950010  serine/threonine-protein kinase RIO1-like [KO:K07178] [EC:2.7.11.1]
103931787  serine/threonine-protein kinase rio2-like isoform X2 [KO:K07179] [EC:2.7.11.1]
103955649  serine/threonine-protein kinase rio2-like isoform X2 [KO:K07179] [EC:2.7.11.1]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
pxb03010  Ribosome
KO pathway
ko03008   
LinkDB

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