PATHWAY: pym01100 Help Entry pym01100                    Pathway                                 Name Metabolic pathways - Pseudomonas yamanorum Class BRITE hierarchy Pathway map pym01100   Metabolic pathways Module pym_M00002   Glycolysis, core module involving three-carbon compounds [PATH:pym01100] pym_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pym01100] pym_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:pym01100] pym_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:pym01100] pym_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:pym01100] pym_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:pym01100] pym_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:pym01100] pym_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:pym01100] pym_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pym01100] pym_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pym01100] pym_M00015   Proline biosynthesis, glutamate => proline [PATH:pym01100] pym_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:pym01100] pym_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:pym01100] pym_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:pym01100] pym_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:pym01100] pym_M00021   Cysteine biosynthesis, serine => cysteine [PATH:pym01100] pym_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:pym01100] pym_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:pym01100] pym_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:pym01100] pym_M00027   GABA (gamma-Aminobutyrate) shunt [PATH:pym01100] pym_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:pym01100] pym_M00035   Methionine degradation [PATH:pym01100] pym_M00036   Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:pym01100] pym_M00040   Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH:pym01100] pym_M00044   Tyrosine degradation, tyrosine => homogentisate [PATH:pym01100] pym_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:pym01100] pym_M00046   Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:pym01100] pym_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:pym01100] pym_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:pym01100] pym_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:pym01100] pym_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:pym01100] pym_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:pym01100] pym_M00063   CMP-KDO biosynthesis [PATH:pym01100] pym_M00082   Fatty acid biosynthesis, initiation [PATH:pym01100] pym_M00083   Fatty acid biosynthesis, elongation [PATH:pym01100] pym_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:pym01100] pym_M00087   beta-Oxidation [PATH:pym01100] pym_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:pym01100] pym_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:pym01100] pym_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:pym01100] pym_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:pym01100] pym_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:pym01100] pym_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:pym01100] pym_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:pym01100] pym_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:pym01100] pym_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:pym01100] pym_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:pym01100] pym_M00149   Succinate dehydrogenase, prokaryotes [PATH:pym01100] pym_M00151   Cytochrome bc1 complex respiratory unit [PATH:pym01100] pym_M00155   Cytochrome c oxidase, prokaryotes [PATH:pym01100] pym_M00156   Cytochrome c oxidase, cbb3-type [PATH:pym01100] pym_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:pym01100] pym_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:pym01100] pym_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pym01100] pym_M00338   Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:pym01100] pym_M00417   Cytochrome o ubiquinol oxidase [PATH:pym01100] pym_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:pym01100] pym_M00531   Assimilatory nitrate reduction, nitrate => ammonia [PATH:pym01100] pym_M00533   Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate [PATH:pym01100] pym_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:pym01100] pym_M00551   Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol [PATH:pym01100] pym_M00552   D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:pym01100] pym_M00555   Betaine biosynthesis, choline => betaine [PATH:pym01100] pym_M00568   Catechol ortho-cleavage, catechol => 3-oxoadipate [PATH:pym01100] pym_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:pym01100] pym_M00621   Glycine cleavage system [PATH:pym01100] pym_M00622   Nicotinate degradation, nicotinate => fumarate [PATH:pym01100] pym_M00637   Anthranilate degradation, anthranilate => catechol [PATH:pym01100] pym_M00793   dTDP-L-rhamnose biosynthesis [PATH:pym01100] pym_M00844   Arginine biosynthesis, ornithine => arginine [PATH:pym01100] pym_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:pym01100] pym_M00879   Arginine succinyltransferase pathway, arginine => glutamate [PATH:pym01100] pym_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:pym01100] pym_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:pym01100] pym_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:pym01100] pym_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:pym01100] pym_M00948   Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate [PATH:pym01100] pym_M00957   Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA [PATH:pym01100] pym_M00958   Adenine ribonucleotide degradation, AMP => Urate [PATH:pym01100] pym_M00959   Guanine ribonucleotide degradation, GMP => Urate [PATH:pym01100] pym_M00970   Proline degradation, proline => glutamate [PATH:pym01100] pym_M00975   Betaine degradation, bacteria, betaine => pyruvate [PATH:pym01100] Organism Pseudomonas yamanorum [GN:pym] Related pathway pym00010   Glycolysis / Gluconeogenesis pym00020   Citrate cycle (TCA cycle) pym00030   Pentose phosphate pathway pym00040   Pentose and glucuronate interconversions pym00051   Fructose and mannose metabolism pym00052   Galactose metabolism pym00053   Ascorbate and aldarate metabolism pym00061   Fatty acid biosynthesis pym00071   Fatty acid degradation pym00130   Ubiquinone and other terpenoid-quinone biosynthesis pym00190   Oxidative phosphorylation pym00220   Arginine biosynthesis pym00230   Purine metabolism pym00240   Pyrimidine metabolism pym00250   Alanine, aspartate and glutamate metabolism pym00260   Glycine, serine and threonine metabolism pym00261   Monobactam biosynthesis pym00270   Cysteine and methionine metabolism pym00280   Valine, leucine and isoleucine degradation pym00290   Valine, leucine and isoleucine biosynthesis pym00300   Lysine biosynthesis pym00310   Lysine degradation pym00330   Arginine and proline metabolism pym00332   Carbapenem biosynthesis pym00340   Histidine metabolism pym00350   Tyrosine metabolism pym00360   Phenylalanine metabolism pym00361   Chlorocyclohexane and chlorobenzene degradation pym00362   Benzoate degradation pym00364   Fluorobenzoate degradation pym00380   Tryptophan metabolism pym00400   Phenylalanine, tyrosine and tryptophan biosynthesis pym00401   Novobiocin biosynthesis pym00405   Phenazine biosynthesis pym00410   beta-Alanine metabolism pym00430   Taurine and hypotaurine metabolism pym00440   Phosphonate and phosphinate metabolism pym00450   Selenocompound metabolism pym00460   Cyanoamino acid metabolism pym00470   D-Amino acid metabolism pym00480   Glutathione metabolism pym00500   Starch and sucrose metabolism pym00520   Amino sugar and nucleotide sugar metabolism pym00521   Streptomycin biosynthesis pym00523   Polyketide sugar unit biosynthesis pym00525   Acarbose and validamycin biosynthesis pym00540   Lipopolysaccharide biosynthesis pym00541   O-Antigen nucleotide sugar biosynthesis pym00543   Exopolysaccharide biosynthesis pym00550   Peptidoglycan biosynthesis pym00552   Teichoic acid biosynthesis pym00561   Glycerolipid metabolism pym00562   Inositol phosphate metabolism pym00564   Glycerophospholipid metabolism pym00565   Ether lipid metabolism pym00592   alpha-Linolenic acid metabolism pym00620   Pyruvate metabolism pym00622   Xylene degradation pym00623   Toluene degradation pym00625   Chloroalkane and chloroalkene degradation pym00626   Naphthalene degradation pym00627   Aminobenzoate degradation pym00630   Glyoxylate and dicarboxylate metabolism pym00633   Nitrotoluene degradation pym00640   Propanoate metabolism pym00643   Styrene degradation pym00650   Butanoate metabolism pym00660   C5-Branched dibasic acid metabolism pym00670   One carbon pool by folate pym00680   Methane metabolism pym00730   Thiamine metabolism pym00740   Riboflavin metabolism pym00750   Vitamin B6 metabolism pym00760   Nicotinate and nicotinamide metabolism pym00770   Pantothenate and CoA biosynthesis pym00780   Biotin metabolism pym00785   Lipoic acid metabolism pym00790   Folate biosynthesis pym00791   Atrazine degradation pym00860   Porphyrin metabolism pym00900   Terpenoid backbone biosynthesis pym00903   Limonene degradation pym00907   Pinene, camphor and geraniol degradation pym00910   Nitrogen metabolism pym00920   Sulfur metabolism pym00930   Caprolactam degradation pym00946   Degradation of flavonoids pym00999   Biosynthesis of various plant secondary metabolites pym01040   Biosynthesis of unsaturated fatty acids pym01055   Biosynthesis of vancomycin group antibiotics KO pathway ko01100     LinkDB All DBs

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