KEGG   PATHWAY: qci03030
Entry
qci03030                    Pathway                                
Name
DNA replication - Qipengyuania citrea
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
qci03030  DNA replication
qci03030

Organism
Qipengyuania citrea [GN:qci]
Gene
NCF85_14780  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
NCF85_06950  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
NCF85_08920  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
NCF85_05825  AAA family ATPase [KO:K02341] [EC:2.7.7.7]
NCF85_16500  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
NCF85_03110  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
NCF85_07280  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
NCF85_11135  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
NCF85_05365  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
NCF85_08155  CHC2 zinc finger domain-containing protein [KO:K02316] [EC:2.7.7.101]
NCF85_08420  single-stranded DNA-binding protein [KO:K03111]
NCF85_10795  ssb; single-stranded DNA-binding protein [KO:K03111]
NCF85_13060  single-stranded DNA-binding protein [KO:K03111]
NCF85_02180  rnhA; ribonuclease HI [KO:K03469] [EC:3.1.26.4]
NCF85_02750  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
NCF85_12665  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
NCF85_07145  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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