KEGG   PATHWAY: rby01100
Entry
rby01100                    Pathway                                
Name
Metabolic pathways - Rhodococcus pyridinivorans TG9
Class
Pathway map
rby01100  Metabolic pathways
rby01100

Module
rby_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:rby01100]
rby_M00002  Glycolysis, core module involving three-carbon compounds [PATH:rby01100]
rby_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rby01100]
rby_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:rby01100]
rby_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:rby01100]
rby_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:rby01100]
rby_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:rby01100]
rby_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rby01100]
rby_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rby01100]
rby_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rby01100]
rby_M00015  Proline biosynthesis, glutamate => proline [PATH:rby01100]
rby_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:rby01100]
rby_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:rby01100]
rby_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:rby01100]
rby_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:rby01100]
rby_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:rby01100]
rby_M00021  Cysteine biosynthesis, serine => cysteine [PATH:rby01100]
rby_M00026  Histidine biosynthesis, PRPP => histidine [PATH:rby01100]
rby_M00027  GABA (gamma-Aminobutyrate) shunt [PATH:rby01100]
rby_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:rby01100]
rby_M00033  Ectoine biosynthesis, aspartate => ectoine [PATH:rby01100]
rby_M00035  Methionine degradation [PATH:rby01100]
rby_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:rby01100]
rby_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:rby01100]
rby_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:rby01100]
rby_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:rby01100]
rby_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:rby01100]
rby_M00082  Fatty acid biosynthesis, initiation [PATH:rby01100]
rby_M00083  Fatty acid biosynthesis, elongation [PATH:rby01100]
rby_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:rby01100]
rby_M00087  beta-Oxidation [PATH:rby01100]
rby_M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:rby01100]
rby_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:rby01100]
rby_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:rby01100]
rby_M00122  Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:rby01100]
rby_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:rby01100]
rby_M00126  Tetrahydrofolate biosynthesis, GTP => THF [PATH:rby01100]
rby_M00149  Succinate dehydrogenase, prokaryotes [PATH:rby01100]
rby_M00151  Cytochrome bc1 complex respiratory unit [PATH:rby01100]
rby_M00155  Cytochrome c oxidase, prokaryotes [PATH:rby01100]
rby_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:rby01100]
rby_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:rby01100]
rby_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rby01100]
rby_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:rby01100]
rby_M00364  C10-C20 isoprenoid biosynthesis, bacteria [PATH:rby01100]
rby_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:rby01100]
rby_M00530  Dissimilatory nitrate reduction, nitrate => ammonia [PATH:rby01100]
rby_M00546  Purine degradation, xanthine => urea [PATH:rby01100]
rby_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:rby01100]
rby_M00551  Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol [PATH:rby01100]
rby_M00554  Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:rby01100]
rby_M00568  Catechol ortho-cleavage, catechol => 3-oxoadipate [PATH:rby01100]
rby_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:rby01100]
rby_M00579  Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:rby01100]
rby_M00621  Glycine cleavage system [PATH:rby01100]
rby_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rby01100]
rby_M00793  dTDP-L-rhamnose biosynthesis [PATH:rby01100]
rby_M00844  Arginine biosynthesis, ornithine => arginine [PATH:rby01100]
rby_M00846  Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:rby01100]
rby_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:rby01100]
rby_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:rby01100]
rby_M00899  Thiamine salvage pathway, HMP/HET => TMP [PATH:rby01100]
rby_M00909  UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:rby01100]
rby_M00916  Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:rby01100]
rby_M00926  Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:rby01100]
rby_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:rby01100]
rby_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:rby01100]
rby_M00970  Proline degradation, proline => glutamate [PATH:rby01100]
Organism
Rhodococcus pyridinivorans TG9 [GN:rby]
Related
pathway
rby00010  Glycolysis / Gluconeogenesis
rby00020  Citrate cycle (TCA cycle)
rby00030  Pentose phosphate pathway
rby00040  Pentose and glucuronate interconversions
rby00051  Fructose and mannose metabolism
rby00052  Galactose metabolism
rby00053  Ascorbate and aldarate metabolism
rby00061  Fatty acid biosynthesis
rby00062  Fatty acid elongation
rby00071  Fatty acid degradation
rby00100  Steroid biosynthesis
rby00130  Ubiquinone and other terpenoid-quinone biosynthesis
rby00190  Oxidative phosphorylation
rby00220  Arginine biosynthesis
rby00230  Purine metabolism
rby00240  Pyrimidine metabolism
rby00250  Alanine, aspartate and glutamate metabolism
rby00260  Glycine, serine and threonine metabolism
rby00261  Monobactam biosynthesis
rby00270  Cysteine and methionine metabolism
rby00280  Valine, leucine and isoleucine degradation
rby00290  Valine, leucine and isoleucine biosynthesis
rby00300  Lysine biosynthesis
rby00310  Lysine degradation
rby00330  Arginine and proline metabolism
rby00332  Carbapenem biosynthesis
rby00340  Histidine metabolism
rby00350  Tyrosine metabolism
rby00360  Phenylalanine metabolism
rby00361  Chlorocyclohexane and chlorobenzene degradation
rby00362  Benzoate degradation
rby00364  Fluorobenzoate degradation
rby00380  Tryptophan metabolism
rby00400  Phenylalanine, tyrosine and tryptophan biosynthesis
rby00401  Novobiocin biosynthesis
rby00410  beta-Alanine metabolism
rby00430  Taurine and hypotaurine metabolism
rby00450  Selenocompound metabolism
rby00460  Cyanoamino acid metabolism
rby00470  D-Amino acid metabolism
rby00480  Glutathione metabolism
rby00500  Starch and sucrose metabolism
rby00514  Other types of O-glycan biosynthesis
rby00515  Mannose type O-glycan biosynthesis
rby00520  Amino sugar and nucleotide sugar metabolism
rby00521  Streptomycin biosynthesis
rby00523  Polyketide sugar unit biosynthesis
rby00525  Acarbose and validamycin biosynthesis
rby00541  O-Antigen nucleotide sugar biosynthesis
rby00542  O-Antigen repeat unit biosynthesis
rby00543  Exopolysaccharide biosynthesis
rby00550  Peptidoglycan biosynthesis
rby00552  Teichoic acid biosynthesis
rby00561  Glycerolipid metabolism
rby00562  Inositol phosphate metabolism
rby00564  Glycerophospholipid metabolism
rby00592  alpha-Linolenic acid metabolism
rby00620  Pyruvate metabolism
rby00621  Dioxin degradation
rby00622  Xylene degradation
rby00623  Toluene degradation
rby00625  Chloroalkane and chloroalkene degradation
rby00626  Naphthalene degradation
rby00627  Aminobenzoate degradation
rby00630  Glyoxylate and dicarboxylate metabolism
rby00633  Nitrotoluene degradation
rby00640  Propanoate metabolism
rby00643  Styrene degradation
rby00650  Butanoate metabolism
rby00660  C5-Branched dibasic acid metabolism
rby00670  One carbon pool by folate
rby00680  Methane metabolism
rby00710  Carbon fixation by Calvin cycle
rby00720  Other carbon fixation pathways
rby00730  Thiamine metabolism
rby00740  Riboflavin metabolism
rby00750  Vitamin B6 metabolism
rby00760  Nicotinate and nicotinamide metabolism
rby00770  Pantothenate and CoA biosynthesis
rby00780  Biotin metabolism
rby00785  Lipoic acid metabolism
rby00790  Folate biosynthesis
rby00791  Atrazine degradation
rby00860  Porphyrin metabolism
rby00900  Terpenoid backbone biosynthesis
rby00903  Limonene degradation
rby00906  Carotenoid biosynthesis
rby00907  Pinene, camphor and geraniol degradation
rby00910  Nitrogen metabolism
rby00920  Sulfur metabolism
rby00930  Caprolactam degradation
rby00946  Degradation of flavonoids
rby00984  Steroid degradation
rby00999  Biosynthesis of various plant secondary metabolites
rby01040  Biosynthesis of unsaturated fatty acids
rby01053  Biosynthesis of siderophore group nonribosomal peptides
KO pathway
ko01100   
LinkDB

DBGET integrated database retrieval system