KEGG   PATHWAY: rcu00900
Entry
rcu00900                    Pathway                                
Name
Terpenoid backbone biosynthesis - Ricinus communis (castor bean)
Description
Terpenoids, also known as isoprenoids, are a large class of natural products consisting of isoprene (C5) units. There are two biosynthetic pathways, the mevalonate pathway [MD:M00095] and the non-mevalonate pathway or the MEP/DOXP pathway [MD:M00096], for the terpenoid building blocks: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). The action of prenyltransferases then generates higher-order building blocks: geranyl diphosphate (GPP), farsenyl diphosphate (FPP), and geranylgeranyl diphosphate (GGPP), which are the precursors of monoterpenoids (C10), sesquiterpenoids (C15), and diterpenoids (C20), respectively. Condensation of these building blocks gives rise to the precursors of sterols (C30) and carotenoids (C40). The MEP/DOXP pathway is absent in higher animals and fungi, but in green plants the MEP/DOXP and mevalonate pathways co-exist in separate cellular compartments. The MEP/DOXP pathway, operating in the plastids, is responsible for the formation of essential oil monoterpenes and linalyl acetate, some sesquiterpenes, diterpenes, and carotenoids and phytol. The mevalonate pathway, operating in the cytosol, gives rise to triterpenes, sterols, and most sesquiterpenes.
Class
Metabolism; Metabolism of terpenoids and polyketides
Pathway map
rcu00900  Terpenoid backbone biosynthesis
rcu00900

Module
rcu_M00095  C5 isoprenoid biosynthesis, mevalonate pathway [PATH:rcu00900]
rcu_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:rcu00900]
rcu_M00366  C10-C20 isoprenoid biosynthesis, plants [PATH:rcu00900]
Other DBs
GO: 0009240 0016091
Organism
Ricinus communis (castor bean) [GN:rcu]
Gene
8277645  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
8284855  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic isoform X1 [KO:K01662] [EC:2.2.1.7]
8277493  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
8262363  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [KO:K01662] [EC:2.2.1.7]
8289006  1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic [KO:K00099] [EC:1.1.1.267]
8262623  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic [KO:K00991] [EC:2.7.7.60]
8268775  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic [KO:K00919] [EC:2.7.1.148]
8287434  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [KO:K01770] [EC:4.6.1.12]
8264075  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [KO:K03526] [EC:1.17.7.1 1.17.7.3]
8279543  4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [KO:K03527] [EC:1.17.7.4]
8280756  probable acetyl-CoA acetyltransferase, cytosolic 2 isoform X3 [KO:K00626] [EC:2.3.1.9]
8289695  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
8265393  hydroxymethylglutaryl-CoA synthase [KO:K01641] [EC:2.3.3.10]
8285370  3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 [KO:K00021] [EC:1.1.1.34]
8258747  3-hydroxy-3-methylglutaryl-coenzyme A reductase 3 [KO:K00021] [EC:1.1.1.34]
8273668  3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 [KO:K00021] [EC:1.1.1.34]
8285549  mevalonate kinase [KO:K00869] [EC:2.7.1.36]
8260664  mevalonate kinase [KO:K00869] [EC:2.7.1.36]
8270372  phosphomevalonate kinase, peroxisomal [KO:K00938] [EC:2.7.4.2]
8262804  diphosphomevalonate decarboxylase MVD2, peroxisomal [KO:K01597] [EC:4.1.1.33]
8289160  isopentenyl phosphate kinase isoform X1 [KO:K06981] [EC:2.7.4.26]
8274290  isopentenyl-diphosphate Delta-isomerase I [KO:K01823] [EC:5.3.3.2]
8286887  farnesyl pyrophosphate synthase isoform X1 [KO:K00787] [EC:2.5.1.1 2.5.1.10]
8262022  farnesyl pyrophosphate synthase 1 [KO:K00787] [EC:2.5.1.1 2.5.1.10]
8271089  solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isoform X1 [KO:K14066] [EC:2.5.1.1]
8279660  heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
8268116  geranylgeranyl pyrophosphate synthase 7, chloroplastic [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
8264179  geranylgeranyl pyrophosphate synthase, chloroplastic [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
8279852  heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
8258714  solanesyl diphosphate synthase 1, chloroplastic isoform X1 [KO:K05356] [EC:2.5.1.84 2.5.1.85]
8289714  dehydrodolichyl diphosphate synthase 6 [KO:K11778] [EC:2.5.1.87]
8286444  dehydrodolichyl diphosphate synthase 2 [KO:K11778] [EC:2.5.1.87]
8289715  dehydrodolichyl diphosphate synthase CPT3 [KO:K11778] [EC:2.5.1.87]
8268767  dehydrodolichyl diphosphate synthase CPT3 [KO:K11778] [EC:2.5.1.87]
8279519  dehydrodolichyl diphosphate synthase complex subunit NUS1 isoform X1 [KO:K11778] [EC:2.5.1.87]
8263422  geranylgeranyl diphosphate reductase, chloroplastic [KO:K10960] [EC:1.3.1.83 1.3.1.111]
8268692  geranylgeranyl diphosphate reductase, chloroplastic [KO:K10960] [EC:1.3.1.83 1.3.1.111]
8260996  probable terpene synthase 12 [KO:K12742] [EC:4.2.3.27]
8266391  protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha isoform X2 [KO:K05955] [EC:2.5.1.58 2.5.1.59]
8269307  protein farnesyltransferase subunit beta isoform X1 [KO:K05954] [EC:2.5.1.58]
8267177  CAAX prenyl protease 2 isoform X1 [KO:K08658] [EC:3.4.26.1]
8286673  CAAX prenyl protease 1 homolog [KO:K06013] [EC:3.4.24.84]
8285750  protein-S-isoprenylcysteine O-methyltransferase A isoform X2 [KO:K00587] [EC:2.1.1.100]
8261997  protein-S-isoprenylcysteine O-methyltransferase A [KO:K00587] [EC:2.1.1.100]
8264512  probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 isoform X2 [KO:K15889] [EC:3.1.1.-]
8276140  probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL2 isoform X2 [KO:K15889] [EC:3.1.1.-]
8270275  farnesylcysteine lyase [KO:K05906] [EC:1.8.3.5 1.8.3.6]
8278896  putative dihydroflavonol 4-reductase [KO:K15891] [EC:1.1.1.354]
8272401  farnesol kinase, chloroplastic isoform X1 [KO:K15892] [EC:2.7.1.216]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00118  D-Glyceraldehyde 3-phosphate
C00129  Isopentenyl diphosphate
C00235  Dimethylallyl diphosphate
C00332  Acetoacetyl-CoA
C00341  Geranyl diphosphate
C00353  Geranylgeranyl diphosphate
C00356  (S)-3-Hydroxy-3-methylglutaryl-CoA
C00418  (R)-Mevalonate
C00448  trans,trans-Farnesyl diphosphate
C01107  (R)-5-Phosphomevalonate
C01126  (2E,6E)-Farnesol
C01143  (R)-5-Diphosphomevalonate
C01230  all-trans-Hexaprenyl diphosphate
C02321  cis-1,4-Polyisoprene
C03461  2-trans,6-trans-Farnesal
C04145  all-trans-Nonaprenyl diphosphate
C04146  all-trans-Octaprenyl diphosphate
C04216  all-trans-Heptaprenyl diphosphate
C04506  Protein C-terminal S-farnesyl-L-cysteine
C04574  di-trans,poly-cis-Undecaprenyl diphosphate
C04748  Protein C-terminal S-farnesyl-L-cysteine methyl ester
C05427  Phytyl diphosphate
C05859  ditrans,polycis-Polyprenyl diphosphate
C06081  Polyprenol
C11434  2-C-Methyl-D-erythritol 4-phosphate
C11435  4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11436  2-Phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11437  1-Deoxy-D-xylulose 5-phosphate
C11453  2-C-Methyl-D-erythritol 2,4-cyclodiphosphate
C11811  1-Hydroxy-2-methyl-2-butenyl 4-diphosphate
C16521  Isoprene
C16826  2-cis,6-trans-Farnesyl diphosphate
C17432  all-trans-Decaprenyl diphosphate
C18321  trans,octacis-Decaprenyl diphosphate
C19691  Farnesylcysteine
C19760  2-cis,6-cis-Farnesyl diphosphate
C19852  tritrans,heptacis-Undecaprenyl diphosphate
C19853  trans,polycis-Polyprenyl diphosphate
C20120  S-Farnesyl protein
C20121  trans,trans-Farnesyl phosphate
C20345  Isopentenyl phosphate
C20847  (R)-Mevalonate 3-phosphate
C20848  (R)-Mevalonate 3,5-bisphosphate
C22453  trans-Anhydromevalonate 5-phosphate
Reference
  Authors
Lange BM, Ghassemian M.
  Title
Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism.
  Journal
Plant Mol Biol 51:925-48 (2003)
DOI:10.1023/A:1023005504702
Reference
  Authors
Saiki R, Nagata A, Kainou T, Matsuda H, Kawamukai M
  Title
Characterization of solanesyl and decaprenyl diphosphate synthases in mice and humans.
  Journal
FEBS J 272:5606-22 (2005)
DOI:10.1111/j.1742-4658.2005.04956.x
Reference
PMID:9858571
  Authors
Sato M, Sato K, Nishikawa S, Hirata A, Kato J, Nakano A
  Title
The yeast RER2 gene, identified by endoplasmic reticulum protein localization mutations, encodes cis-prenyltransferase, a key enzyme in dolichol synthesis.
  Journal
Mol Cell Biol 19:471-83 (1999)
DOI:10.1128/MCB.19.1.471
Reference
  Authors
Vannice JC, Skaff DA, Keightley A, Addo JK, Wyckoff GJ, Miziorko HM
  Title
Identification in Haloferax volcanii of phosphomevalonate decarboxylase and isopentenyl phosphate kinase as catalysts of the terminal enzyme reactions in an  archaeal alternate mevalonate pathway.
  Journal
J Bacteriol 196:1055-63 (2014)
DOI:10.1128/JB.01230-13
Related
pathway
rcu00010  Glycolysis / Gluconeogenesis
rcu00100  Steroid biosynthesis
rcu00130  Ubiquinone and other terpenoid-quinone biosynthesis
rcu00270  Cysteine and methionine metabolism
rcu00510  N-Glycan biosynthesis
rcu00902  Monoterpenoid biosynthesis
rcu00904  Diterpenoid biosynthesis
rcu00906  Carotenoid biosynthesis
rcu00908  Zeatin biosynthesis
rcu00909  Sesquiterpenoid and triterpenoid biosynthesis
KO pathway
ko00900   
LinkDB

DBGET integrated database retrieval system