KEGG   PATHWAY: rde01100
Entry
rde01100                    Pathway                                
Name
Metabolic pathways - Roseobacter denitrificans
Class
Pathway map
rde01100  Metabolic pathways
rde01100

Module
rde_M00002  Glycolysis, core module involving three-carbon compounds [PATH:rde01100]
rde_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rde01100]
rde_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:rde01100]
rde_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:rde01100]
rde_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:rde01100]
rde_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rde01100]
rde_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rde01100]
rde_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rde01100]
rde_M00015  Proline biosynthesis, glutamate => proline [PATH:rde01100]
rde_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:rde01100]
rde_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:rde01100]
rde_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:rde01100]
rde_M00021  Cysteine biosynthesis, serine => cysteine [PATH:rde01100]
rde_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:rde01100]
rde_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:rde01100]
rde_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:rde01100]
rde_M00045  Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:rde01100]
rde_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:rde01100]
rde_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:rde01100]
rde_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:rde01100]
rde_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:rde01100]
rde_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:rde01100]
rde_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:rde01100]
rde_M00082  Fatty acid biosynthesis, initiation [PATH:rde01100]
rde_M00083  Fatty acid biosynthesis, elongation [PATH:rde01100]
rde_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:rde01100]
rde_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:rde01100]
rde_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:rde01100]
rde_M00140  C1-unit interconversion, prokaryotes [PATH:rde01100]
rde_M00144  NADH:quinone oxidoreductase, prokaryotes [PATH:rde01100]
rde_M00149  Succinate dehydrogenase, prokaryotes [PATH:rde01100]
rde_M00151  Cytochrome bc1 complex respiratory unit [PATH:rde01100]
rde_M00155  Cytochrome c oxidase, prokaryotes [PATH:rde01100]
rde_M00156  Cytochrome c oxidase, cbb3-type [PATH:rde01100]
rde_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:rde01100]
rde_M00168  CAM (Crassulacean acid metabolism), dark [PATH:rde01100]
rde_M00169  CAM (Crassulacean acid metabolism), light [PATH:rde01100]
rde_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rde01100]
rde_M00364  C10-C20 isoprenoid biosynthesis, bacteria [PATH:rde01100]
rde_M00373  Ethylmalonyl pathway [PATH:rde01100]
rde_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:rde01100]
rde_M00529  Denitrification, nitrate => nitrogen [PATH:rde01100]
rde_M00531  Assimilatory nitrate reduction, nitrate => ammonia [PATH:rde01100]
rde_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:rde01100]
rde_M00552  D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:rde01100]
rde_M00555  Betaine biosynthesis, choline => betaine [PATH:rde01100]
rde_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:rde01100]
rde_M00579  Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:rde01100]
rde_M00595  Thiosulfate oxidation by SOX complex, thiosulfate => sulfate [PATH:rde01100]
rde_M00621  Glycine cleavage system [PATH:rde01100]
rde_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rde01100]
rde_M00793  dTDP-L-rhamnose biosynthesis [PATH:rde01100]
rde_M00844  Arginine biosynthesis, ornithine => arginine [PATH:rde01100]
rde_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:rde01100]
rde_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:rde01100]
rde_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:rde01100]
rde_M00899  Thiamine salvage pathway, HMP/HET => TMP [PATH:rde01100]
rde_M00909  UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:rde01100]
rde_M00925  Cobalamin biosynthesis, aerobic, uroporphyrinogen III => precorrin 2 => cobyrinate a,c-diamide [PATH:rde01100]
rde_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:rde01100]
rde_M00959  Guanine ribonucleotide degradation, GMP => Urate [PATH:rde01100]
rde_M00970  Proline degradation, proline => glutamate [PATH:rde01100]
Organism
Roseobacter denitrificans [GN:rde]
Related
pathway
rde00010  Glycolysis / Gluconeogenesis
rde00020  Citrate cycle (TCA cycle)
rde00030  Pentose phosphate pathway
rde00040  Pentose and glucuronate interconversions
rde00051  Fructose and mannose metabolism
rde00052  Galactose metabolism
rde00053  Ascorbate and aldarate metabolism
rde00061  Fatty acid biosynthesis
rde00071  Fatty acid degradation
rde00100  Steroid biosynthesis
rde00121  Secondary bile acid biosynthesis
rde00130  Ubiquinone and other terpenoid-quinone biosynthesis
rde00190  Oxidative phosphorylation
rde00220  Arginine biosynthesis
rde00230  Purine metabolism
rde00240  Pyrimidine metabolism
rde00250  Alanine, aspartate and glutamate metabolism
rde00260  Glycine, serine and threonine metabolism
rde00261  Monobactam biosynthesis
rde00270  Cysteine and methionine metabolism
rde00280  Valine, leucine and isoleucine degradation
rde00290  Valine, leucine and isoleucine biosynthesis
rde00300  Lysine biosynthesis
rde00310  Lysine degradation
rde00330  Arginine and proline metabolism
rde00332  Carbapenem biosynthesis
rde00340  Histidine metabolism
rde00350  Tyrosine metabolism
rde00360  Phenylalanine metabolism
rde00361  Chlorocyclohexane and chlorobenzene degradation
rde00362  Benzoate degradation
rde00380  Tryptophan metabolism
rde00400  Phenylalanine, tyrosine and tryptophan biosynthesis
rde00401  Novobiocin biosynthesis
rde00410  beta-Alanine metabolism
rde00430  Taurine and hypotaurine metabolism
rde00440  Phosphonate and phosphinate metabolism
rde00450  Selenocompound metabolism
rde00460  Cyanoamino acid metabolism
rde00470  D-Amino acid metabolism
rde00480  Glutathione metabolism
rde00500  Starch and sucrose metabolism
rde00520  Amino sugar and nucleotide sugar metabolism
rde00521  Streptomycin biosynthesis
rde00523  Polyketide sugar unit biosynthesis
rde00525  Acarbose and validamycin biosynthesis
rde00540  Lipopolysaccharide biosynthesis
rde00541  O-Antigen nucleotide sugar biosynthesis
rde00543  Exopolysaccharide biosynthesis
rde00550  Peptidoglycan biosynthesis
rde00552  Teichoic acid biosynthesis
rde00561  Glycerolipid metabolism
rde00562  Inositol phosphate metabolism
rde00564  Glycerophospholipid metabolism
rde00600  Sphingolipid metabolism
rde00620  Pyruvate metabolism
rde00625  Chloroalkane and chloroalkene degradation
rde00626  Naphthalene degradation
rde00630  Glyoxylate and dicarboxylate metabolism
rde00640  Propanoate metabolism
rde00643  Styrene degradation
rde00650  Butanoate metabolism
rde00660  C5-Branched dibasic acid metabolism
rde00670  One carbon pool by folate
rde00680  Methane metabolism
rde00710  Carbon fixation in photosynthetic organisms
rde00730  Thiamine metabolism
rde00740  Riboflavin metabolism
rde00750  Vitamin B6 metabolism
rde00760  Nicotinate and nicotinamide metabolism
rde00770  Pantothenate and CoA biosynthesis
rde00780  Biotin metabolism
rde00785  Lipoic acid metabolism
rde00790  Folate biosynthesis
rde00860  Porphyrin metabolism
rde00900  Terpenoid backbone biosynthesis
rde00903  Limonene degradation
rde00906  Carotenoid biosynthesis
rde00907  Pinene, camphor and geraniol degradation
rde00910  Nitrogen metabolism
rde00920  Sulfur metabolism
rde00930  Caprolactam degradation
rde00946  Degradation of flavonoids
rde00999  Biosynthesis of various plant secondary metabolites
KO pathway
ko01100   
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