KEGG   PATHWAY: rdi01100
Entry
rdi01100                    Pathway                                
Name
Metabolic pathways - Rhizorhabdus dicambivorans
Class
Pathway map
rdi01100  Metabolic pathways
rdi01100

Module
rdi_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:rdi01100]
rdi_M00002  Glycolysis, core module involving three-carbon compounds [PATH:rdi01100]
rdi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rdi01100]
rdi_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:rdi01100]
rdi_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:rdi01100]
rdi_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:rdi01100]
rdi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rdi01100]
rdi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rdi01100]
rdi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rdi01100]
rdi_M00012  Glyoxylate cycle [PATH:rdi01100]
rdi_M00015  Proline biosynthesis, glutamate => proline [PATH:rdi01100]
rdi_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:rdi01100]
rdi_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:rdi01100]
rdi_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:rdi01100]
rdi_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:rdi01100]
rdi_M00021  Cysteine biosynthesis, serine => cysteine [PATH:rdi01100]
rdi_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:rdi01100]
rdi_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:rdi01100]
rdi_M00024  Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:rdi01100]
rdi_M00026  Histidine biosynthesis, PRPP => histidine [PATH:rdi01100]
rdi_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:rdi01100]
rdi_M00040  Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH:rdi01100]
rdi_M00044  Tyrosine degradation, tyrosine => homogentisate [PATH:rdi01100]
rdi_M00045  Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:rdi01100]
rdi_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:rdi01100]
rdi_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:rdi01100]
rdi_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:rdi01100]
rdi_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:rdi01100]
rdi_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:rdi01100]
rdi_M00082  Fatty acid biosynthesis, initiation [PATH:rdi01100]
rdi_M00083  Fatty acid biosynthesis, elongation [PATH:rdi01100]
rdi_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:rdi01100]
rdi_M00087  beta-Oxidation [PATH:rdi01100]
rdi_M00091  Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:rdi01100]
rdi_M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:rdi01100]
rdi_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:rdi01100]
rdi_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:rdi01100]
rdi_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:rdi01100]
rdi_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:rdi01100]
rdi_M00126  Tetrahydrofolate biosynthesis, GTP => THF [PATH:rdi01100]
rdi_M00144  NADH:quinone oxidoreductase, prokaryotes [PATH:rdi01100]
rdi_M00149  Succinate dehydrogenase, prokaryotes [PATH:rdi01100]
rdi_M00151  Cytochrome bc1 complex respiratory unit [PATH:rdi01100]
rdi_M00155  Cytochrome c oxidase, prokaryotes [PATH:rdi01100]
rdi_M00156  Cytochrome c oxidase, cbb3-type [PATH:rdi01100]
rdi_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:rdi01100]
rdi_M00168  CAM (Crassulacean acid metabolism), dark [PATH:rdi01100]
rdi_M00169  CAM (Crassulacean acid metabolism), light [PATH:rdi01100]
rdi_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:rdi01100]
rdi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rdi01100]
rdi_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:rdi01100]
rdi_M00531  Assimilatory nitrate reduction, nitrate => ammonia [PATH:rdi01100]
rdi_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:rdi01100]
rdi_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:rdi01100]
rdi_M00579  Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:rdi01100]
rdi_M00621  Glycine cleavage system [PATH:rdi01100]
rdi_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rdi01100]
rdi_M00844  Arginine biosynthesis, ornithine => arginine [PATH:rdi01100]
rdi_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:rdi01100]
rdi_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:rdi01100]
rdi_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:rdi01100]
rdi_M00909  UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:rdi01100]
rdi_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:rdi01100]
rdi_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:rdi01100]
rdi_M00970  Proline degradation, proline => glutamate [PATH:rdi01100]
Organism
Rhizorhabdus dicambivorans [GN:rdi]
Related
pathway
rdi00010  Glycolysis / Gluconeogenesis
rdi00020  Citrate cycle (TCA cycle)
rdi00030  Pentose phosphate pathway
rdi00040  Pentose and glucuronate interconversions
rdi00051  Fructose and mannose metabolism
rdi00052  Galactose metabolism
rdi00053  Ascorbate and aldarate metabolism
rdi00061  Fatty acid biosynthesis
rdi00071  Fatty acid degradation
rdi00121  Secondary bile acid biosynthesis
rdi00130  Ubiquinone and other terpenoid-quinone biosynthesis
rdi00190  Oxidative phosphorylation
rdi00220  Arginine biosynthesis
rdi00230  Purine metabolism
rdi00240  Pyrimidine metabolism
rdi00250  Alanine, aspartate and glutamate metabolism
rdi00260  Glycine, serine and threonine metabolism
rdi00261  Monobactam biosynthesis
rdi00270  Cysteine and methionine metabolism
rdi00280  Valine, leucine and isoleucine degradation
rdi00290  Valine, leucine and isoleucine biosynthesis
rdi00300  Lysine biosynthesis
rdi00310  Lysine degradation
rdi00330  Arginine and proline metabolism
rdi00332  Carbapenem biosynthesis
rdi00340  Histidine metabolism
rdi00350  Tyrosine metabolism
rdi00360  Phenylalanine metabolism
rdi00361  Chlorocyclohexane and chlorobenzene degradation
rdi00362  Benzoate degradation
rdi00364  Fluorobenzoate degradation
rdi00365  Furfural degradation
rdi00380  Tryptophan metabolism
rdi00400  Phenylalanine, tyrosine and tryptophan biosynthesis
rdi00401  Novobiocin biosynthesis
rdi00410  beta-Alanine metabolism
rdi00430  Taurine and hypotaurine metabolism
rdi00450  Selenocompound metabolism
rdi00460  Cyanoamino acid metabolism
rdi00470  D-Amino acid metabolism
rdi00480  Glutathione metabolism
rdi00500  Starch and sucrose metabolism
rdi00520  Amino sugar and nucleotide sugar metabolism
rdi00521  Streptomycin biosynthesis
rdi00523  Polyketide sugar unit biosynthesis
rdi00540  Lipopolysaccharide biosynthesis
rdi00541  O-Antigen nucleotide sugar biosynthesis
rdi00543  Exopolysaccharide biosynthesis
rdi00550  Peptidoglycan biosynthesis
rdi00552  Teichoic acid biosynthesis
rdi00561  Glycerolipid metabolism
rdi00562  Inositol phosphate metabolism
rdi00564  Glycerophospholipid metabolism
rdi00565  Ether lipid metabolism
rdi00592  alpha-Linolenic acid metabolism
rdi00620  Pyruvate metabolism
rdi00621  Dioxin degradation
rdi00622  Xylene degradation
rdi00623  Toluene degradation
rdi00624  Polycyclic aromatic hydrocarbon degradation
rdi00625  Chloroalkane and chloroalkene degradation
rdi00626  Naphthalene degradation
rdi00627  Aminobenzoate degradation
rdi00630  Glyoxylate and dicarboxylate metabolism
rdi00633  Nitrotoluene degradation
rdi00640  Propanoate metabolism
rdi00643  Styrene degradation
rdi00650  Butanoate metabolism
rdi00660  C5-Branched dibasic acid metabolism
rdi00670  One carbon pool by folate
rdi00680  Methane metabolism
rdi00730  Thiamine metabolism
rdi00740  Riboflavin metabolism
rdi00750  Vitamin B6 metabolism
rdi00760  Nicotinate and nicotinamide metabolism
rdi00770  Pantothenate and CoA biosynthesis
rdi00780  Biotin metabolism
rdi00785  Lipoic acid metabolism
rdi00790  Folate biosynthesis
rdi00860  Porphyrin metabolism
rdi00900  Terpenoid backbone biosynthesis
rdi00906  Carotenoid biosynthesis
rdi00907  Pinene, camphor and geraniol degradation
rdi00910  Nitrogen metabolism
rdi00920  Sulfur metabolism
rdi00984  Steroid degradation
rdi00999  Biosynthesis of various plant secondary metabolites
rdi01040  Biosynthesis of unsaturated fatty acids
KO pathway
ko01100   
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