KEGG   PATHWAY: rgv00020
Entry
rgv00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Ruminococcus gauvreauii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rgv00020  Citrate cycle (TCA cycle)
rgv00020

Module
rgv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rgv00020]
rgv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rgv00020]
Other DBs
GO: 0006099
Organism
Ruminococcus gauvreauii [GN:rgv]
Gene
NQ502_14300  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
NQ502_15080  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
NQ502_06465  hydratase [KO:K01681] [EC:4.2.1.3]
NQ502_00210  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NQ502_13140  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NQ502_09115  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
NQ502_09120  Fe-S-containing hydro-lyase [KO:K01678] [EC:4.2.1.2]
NQ502_13175  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
NQ502_13820  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
NQ502_18545  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
NQ502_13840  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
NQ502_16135  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rgv00010  Glycolysis / Gluconeogenesis
rgv00053  Ascorbate and aldarate metabolism
rgv00061  Fatty acid biosynthesis
rgv00071  Fatty acid degradation
rgv00190  Oxidative phosphorylation
rgv00220  Arginine biosynthesis
rgv00250  Alanine, aspartate and glutamate metabolism
rgv00280  Valine, leucine and isoleucine degradation
rgv00350  Tyrosine metabolism
rgv00470  D-Amino acid metabolism
rgv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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