KEGG   PATHWAY: rir01100
Entry
rir01100                    Pathway                                
Name
Metabolic pathways - Agrobacterium pusense IRBG74
Class
Pathway map
rir01100  Metabolic pathways
rir01100

Module
rir_M00002  Glycolysis, core module involving three-carbon compounds [PATH:rir01100]
rir_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:rir01100]
rir_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:rir01100]
rir_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:rir01100]
rir_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:rir01100]
rir_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:rir01100]
rir_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rir01100]
rir_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rir01100]
rir_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rir01100]
rir_M00012  Glyoxylate cycle [PATH:rir01100]
rir_M00015  Proline biosynthesis, glutamate => proline [PATH:rir01100]
rir_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:rir01100]
rir_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:rir01100]
rir_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:rir01100]
rir_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:rir01100]
rir_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:rir01100]
rir_M00021  Cysteine biosynthesis, serine => cysteine [PATH:rir01100]
rir_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:rir01100]
rir_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:rir01100]
rir_M00026  Histidine biosynthesis, PRPP => histidine [PATH:rir01100]
rir_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:rir01100]
rir_M00045  Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:rir01100]
rir_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:rir01100]
rir_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:rir01100]
rir_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:rir01100]
rir_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:rir01100]
rir_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:rir01100]
rir_M00082  Fatty acid biosynthesis, initiation [PATH:rir01100]
rir_M00083  Fatty acid biosynthesis, elongation [PATH:rir01100]
rir_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:rir01100]
rir_M00091  Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:rir01100]
rir_M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:rir01100]
rir_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:rir01100]
rir_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:rir01100]
rir_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:rir01100]
rir_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:rir01100]
rir_M00134  Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:rir01100]
rir_M00144  NADH:quinone oxidoreductase, prokaryotes [PATH:rir01100]
rir_M00149  Succinate dehydrogenase, prokaryotes [PATH:rir01100]
rir_M00151  Cytochrome bc1 complex respiratory unit [PATH:rir01100]
rir_M00155  Cytochrome c oxidase, prokaryotes [PATH:rir01100]
rir_M00156  Cytochrome c oxidase, cbb3-type [PATH:rir01100]
rir_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:rir01100]
rir_M00169  CAM (Crassulacean acid metabolism), light [PATH:rir01100]
rir_M00175  Nitrogen fixation, nitrogen => ammonia [PATH:rir01100]
rir_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rir01100]
rir_M00417  Cytochrome o ubiquinol oxidase [PATH:rir01100]
rir_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:rir01100]
rir_M00531  Assimilatory nitrate reduction, nitrate => ammonia [PATH:rir01100]
rir_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:rir01100]
rir_M00552  D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:rir01100]
rir_M00555  Betaine biosynthesis, choline => betaine [PATH:rir01100]
rir_M00565  Trehalose biosynthesis, D-glucose 1P => trehalose [PATH:rir01100]
rir_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:rir01100]
rir_M00621  Glycine cleavage system [PATH:rir01100]
rir_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rir01100]
rir_M00793  dTDP-L-rhamnose biosynthesis [PATH:rir01100]
rir_M00844  Arginine biosynthesis, ornithine => arginine [PATH:rir01100]
rir_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:rir01100]
rir_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:rir01100]
rir_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:rir01100]
rir_M00899  Thiamine salvage pathway, HMP/HET => TMP [PATH:rir01100]
rir_M00909  UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:rir01100]
rir_M00919  Ectoine degradation, ectoine => aspartate [PATH:rir01100]
rir_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:rir01100]
rir_M00939  Pyrimidine degradation, uracil => 3-hydroxypropanoate [PATH:rir01100]
rir_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:rir01100]
rir_M00959  Guanine ribonucleotide degradation, GMP => Urate [PATH:rir01100]
rir_M00970  Proline degradation, proline => glutamate [PATH:rir01100]
rir_M00975  Betaine degradation, bacteria, betaine => pyruvate [PATH:rir01100]
Organism
Agrobacterium pusense IRBG74 [GN:rir]
Related
pathway
rir00010  Glycolysis / Gluconeogenesis
rir00020  Citrate cycle (TCA cycle)
rir00030  Pentose phosphate pathway
rir00040  Pentose and glucuronate interconversions
rir00051  Fructose and mannose metabolism
rir00052  Galactose metabolism
rir00053  Ascorbate and aldarate metabolism
rir00061  Fatty acid biosynthesis
rir00071  Fatty acid degradation
rir00130  Ubiquinone and other terpenoid-quinone biosynthesis
rir00190  Oxidative phosphorylation
rir00220  Arginine biosynthesis
rir00230  Purine metabolism
rir00240  Pyrimidine metabolism
rir00250  Alanine, aspartate and glutamate metabolism
rir00260  Glycine, serine and threonine metabolism
rir00261  Monobactam biosynthesis
rir00270  Cysteine and methionine metabolism
rir00280  Valine, leucine and isoleucine degradation
rir00290  Valine, leucine and isoleucine biosynthesis
rir00300  Lysine biosynthesis
rir00310  Lysine degradation
rir00311  Penicillin and cephalosporin biosynthesis
rir00330  Arginine and proline metabolism
rir00332  Carbapenem biosynthesis
rir00340  Histidine metabolism
rir00350  Tyrosine metabolism
rir00360  Phenylalanine metabolism
rir00361  Chlorocyclohexane and chlorobenzene degradation
rir00362  Benzoate degradation
rir00364  Fluorobenzoate degradation
rir00380  Tryptophan metabolism
rir00400  Phenylalanine, tyrosine and tryptophan biosynthesis
rir00401  Novobiocin biosynthesis
rir00410  beta-Alanine metabolism
rir00430  Taurine and hypotaurine metabolism
rir00440  Phosphonate and phosphinate metabolism
rir00450  Selenocompound metabolism
rir00460  Cyanoamino acid metabolism
rir00470  D-Amino acid metabolism
rir00480  Glutathione metabolism
rir00500  Starch and sucrose metabolism
rir00511  Other glycan degradation
rir00520  Amino sugar and nucleotide sugar metabolism
rir00521  Streptomycin biosynthesis
rir00523  Polyketide sugar unit biosynthesis
rir00525  Acarbose and validamycin biosynthesis
rir00540  Lipopolysaccharide biosynthesis
rir00541  O-Antigen nucleotide sugar biosynthesis
rir00543  Exopolysaccharide biosynthesis
rir00550  Peptidoglycan biosynthesis
rir00552  Teichoic acid biosynthesis
rir00561  Glycerolipid metabolism
rir00562  Inositol phosphate metabolism
rir00564  Glycerophospholipid metabolism
rir00600  Sphingolipid metabolism
rir00620  Pyruvate metabolism
rir00622  Xylene degradation
rir00623  Toluene degradation
rir00625  Chloroalkane and chloroalkene degradation
rir00626  Naphthalene degradation
rir00627  Aminobenzoate degradation
rir00630  Glyoxylate and dicarboxylate metabolism
rir00633  Nitrotoluene degradation
rir00640  Propanoate metabolism
rir00643  Styrene degradation
rir00650  Butanoate metabolism
rir00660  C5-Branched dibasic acid metabolism
rir00670  One carbon pool by folate
rir00680  Methane metabolism
rir00710  Carbon fixation by Calvin cycle
rir00720  Other carbon fixation pathways
rir00730  Thiamine metabolism
rir00740  Riboflavin metabolism
rir00750  Vitamin B6 metabolism
rir00760  Nicotinate and nicotinamide metabolism
rir00770  Pantothenate and CoA biosynthesis
rir00780  Biotin metabolism
rir00785  Lipoic acid metabolism
rir00790  Folate biosynthesis
rir00791  Atrazine degradation
rir00860  Porphyrin metabolism
rir00900  Terpenoid backbone biosynthesis
rir00903  Limonene degradation
rir00906  Carotenoid biosynthesis
rir00907  Pinene, camphor and geraniol degradation
rir00910  Nitrogen metabolism
rir00920  Sulfur metabolism
rir00930  Caprolactam degradation
rir00946  Degradation of flavonoids
rir00999  Biosynthesis of various plant secondary metabolites
rir01040  Biosynthesis of unsaturated fatty acids
rir01053  Biosynthesis of siderophore group nonribosomal peptides
KO pathway
ko01100   
LinkDB

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