KEGG   PATHWAY: rno00020
Entry
rno00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rattus norvegicus (rat)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rno00020  Citrate cycle (TCA cycle)
rno00020

Module
rno_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rno00020]
rno_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rno00020]
rno_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rno00020]
rno_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rno00020]
rno_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rno00020]
Other DBs
GO: 0006099
Organism
Rattus norvegicus (rat) [GN:rno]
Gene
170587  Cs; citrate synthase, mitochondrial precursor [KO:K01647] [EC:2.3.3.1]
120093130  Cs-ps1; LOW QUALITY PROTEIN: citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
24159  Acly; ATP-citrate synthase isoform 1 [KO:K01648] [EC:2.3.3.8]
79250  Aco2; aconitate hydratase, mitochondrial precursor [KO:K01681] [EC:4.2.1.3]
50655  Aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
24479  Idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
361596  Idh2; isocitrate dehydrogenase [NADP], mitochondrial precursor [KO:K00031] [EC:1.1.1.42]
114096  Idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial precursor [KO:K00030] [EC:1.1.1.41]
94173  Idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial precursor [KO:K00030] [EC:1.1.1.41]
25179  Idh3g; isocitrate dehydrogenase [NAD] subunit gamma 1, mitochondrial precursor [KO:K00030] [EC:1.1.1.41]
100125384  4933405O20Rikl; probable isocitrate dehydrogenase [NAD] gamma 2, mitochondrial [KO:K00030] [EC:1.1.1.41]
290566  Ogdhl; 2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
360975  Ogdh; 2-oxoglutarate dehydrogenase complex component E1 precursor [KO:K00164] [EC:1.2.4.2]
299201  Dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
298942  Dld; dihydrolipoyl dehydrogenase, mitochondrial precursor [KO:K00382] [EC:1.8.1.4]
114597  Suclg1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial precursor [KO:K01899] [EC:6.2.1.4 6.2.1.5]
362404  Suclg2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
361071  Sucla2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
157074  Sdha; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial precursor [KO:K00234] [EC:1.3.5.1]
298596  Sdhb; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial precursor [KO:K00235] [EC:1.3.5.1]
289217  Sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
363061  Sdhd; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
24368  Fh; fumarate hydratase, mitochondrial precursor [KO:K01679] [EC:4.2.1.2]
24551  Mdh1; malate dehydrogenase, cytoplasmic isoform Mdh1 [KO:K00025] [EC:1.1.1.37]
81829  Mdh2; malate dehydrogenase, mitochondrial precursor [KO:K00026] [EC:1.1.1.37]
25104  Pc; pyruvate carboxylase, mitochondrial precursor [KO:K01958] [EC:6.4.1.1]
362282  Pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
361042  Pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
117098  Pdha2; pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial precursor [KO:K00161] [EC:1.2.4.1]
29554  Pdha1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial precursor [KO:K00161] [EC:1.2.4.1]
289950  Pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial precursor [KO:K00162] [EC:1.2.4.1]
81654  Dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rno00010  Glycolysis / Gluconeogenesis
rno00053  Ascorbate and aldarate metabolism
rno00061  Fatty acid biosynthesis
rno00062  Fatty acid elongation
rno00071  Fatty acid degradation
rno00190  Oxidative phosphorylation
rno00220  Arginine biosynthesis
rno00250  Alanine, aspartate and glutamate metabolism
rno00280  Valine, leucine and isoleucine degradation
rno00350  Tyrosine metabolism
rno00470  D-Amino acid metabolism
rno00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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