KEGG   PATHWAY: rsz00030
Entry
rsz00030                    Pathway                                
Name
Pentose phosphate pathway - Raphanus sativus (radish)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rsz00030  Pentose phosphate pathway
rsz00030

Module
rsz_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:rsz00030]
rsz_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:rsz00030]
rsz_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:rsz00030]
rsz_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:rsz00030]
Other DBs
GO: 0006098
Organism
Raphanus sativus (radish) [GN:rsz]
Gene
108828647  glucose-6-phosphate isomerase, cytosolic [KO:K01810] [EC:5.3.1.9]
108843444  glucose-6-phosphate isomerase 1, chloroplastic isoform X1 [KO:K01810] [EC:5.3.1.9]
108855561  glucose-6-phosphate isomerase 1, chloroplastic [KO:K01810] [EC:5.3.1.9]
108822494  inactive glucose-6-phosphate 1-dehydrogenase 4, chloroplastic isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
108846680  glucose-6-phosphate 1-dehydrogenase 2, chloroplastic [KO:K00036] [EC:1.1.1.49 1.1.1.363]
108862860  glucose-6-phosphate 1-dehydrogenase 3, chloroplastic [KO:K00036] [EC:1.1.1.49 1.1.1.363]
108819273  glucose-6-phosphate 1-dehydrogenase 3, chloroplastic isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
108823066  glucose-6-phosphate 1-dehydrogenase 1, chloroplastic isoform X2 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
108830583  glucose-6-phosphate 1-dehydrogenase 6, cytoplasmic [KO:K00036] [EC:1.1.1.49 1.1.1.363]
108828694  glucose-6-phosphate 1-dehydrogenase 5, cytoplasmic [KO:K00036] [EC:1.1.1.49 1.1.1.363]
130499207  LOW QUALITY PROTEIN: glucose-6-phosphate 1-dehydrogenase 1, chloroplastic-like [KO:K00036] [EC:1.1.1.49 1.1.1.363]
108823406  6-phosphogluconolactonase 3, chloroplastic [KO:K01057] [EC:3.1.1.31]
108848513  6-phosphogluconolactonase 3, chloroplastic [KO:K01057] [EC:3.1.1.31]
108835802  probable 6-phosphogluconolactonase 2 [KO:K01057] [EC:3.1.1.31]
108840876  LOW QUALITY PROTEIN: probable 6-phosphogluconolactonase 1 [KO:K01057] [EC:3.1.1.31]
108809188  probable 6-phosphogluconolactonase 1 [KO:K01057] [EC:3.1.1.31]
108851700  probable 6-phosphogluconolactonase 4 [KO:K01057] [EC:3.1.1.31]
108852813  probable 6-phosphogluconolactonase 5 [KO:K01057] [EC:3.1.1.31]
108848982  probable 6-phosphogluconolactonase 5 [KO:K01057] [EC:3.1.1.31]
108827544  6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic [KO:K00033] [EC:1.1.1.44 1.1.1.343]
108861451  6-phosphogluconate dehydrogenase, decarboxylating 2 [KO:K00033] [EC:1.1.1.44 1.1.1.343]
108855044  6-phosphogluconate dehydrogenase, decarboxylating 3, chloroplastic [KO:K00033] [EC:1.1.1.44 1.1.1.343]
108837464  ribulose-5-phosphate-3-epimerase, chloroplastic [KO:K01783] [EC:5.1.3.1]
108817059  ribulose-5-phosphate-3-epimerase, chloroplastic-like [KO:K01783] [EC:5.1.3.1]
108824053  ribulose-phosphate 3-epimerase, cytoplasmic isoform [KO:K01783] [EC:5.1.3.1]
130505539  LOW QUALITY PROTEIN: ribulose-5-phosphate-3-epimerase, chloroplastic-like [KO:K01783] [EC:5.1.3.1]
108862662  transketolase-1, chloroplastic [KO:K00615] [EC:2.2.1.1]
108812301  transketolase-2, chloroplastic [KO:K00615] [EC:2.2.1.1]
108854671  transketolase-1, chloroplastic [KO:K00615] [EC:2.2.1.1]
108811636  transketolase, chloroplastic-like [KO:K00615] [EC:2.2.1.1]
130511812  transketolase-1, chloroplastic-like [KO:K00615] [EC:2.2.1.1]
108846026  uncharacterized protein LOC108846026 [KO:K00616] [EC:2.2.1.2]
108847735  uncharacterized protein LOC108847735 [KO:K00616] [EC:2.2.1.2]
108817482  uncharacterized protein LOC108817482 [KO:K00616] [EC:2.2.1.2]
108863357  probable ribose-5-phosphate isomerase 3, chloroplastic [KO:K01807] [EC:5.3.1.6]
108836666  probable ribose-5-phosphate isomerase 2 [KO:K01807] [EC:5.3.1.6]
108835770  probable ribose-5-phosphate isomerase 4, chloroplastic [KO:K01807] [EC:5.3.1.6]
108811940  probable ribose-5-phosphate isomerase 3, chloroplastic [KO:K01807] [EC:5.3.1.6]
108811941  probable ribose-5-phosphate isomerase 3, chloroplastic [KO:K01807] [EC:5.3.1.6]
108818768  probable ribose-5-phosphate isomerase 1 [KO:K01807] [EC:5.3.1.6]
108812425  probable ribose-5-phosphate isomerase 2 [KO:K01807] [EC:5.3.1.6]
130506002  probable ribose-5-phosphate isomerase 3, chloroplastic [KO:K01807] [EC:5.3.1.6]
108850335  ribokinase [KO:K00852] [EC:2.7.1.15]
108813230  probable phosphoglucomutase, cytoplasmic 1 [KO:K01835] [EC:5.4.2.2]
108822590  probable phosphoglucomutase, cytoplasmic 1 [KO:K01835] [EC:5.4.2.2]
108828634  phosphoglucomutase, chloroplastic [KO:K01835] [EC:5.4.2.2]
108822094  probable phosphoglucomutase, cytoplasmic 1 [KO:K01835] [EC:5.4.2.2]
130504324  probable phosphoglucomutase, cytoplasmic 1 [KO:K01835] [EC:5.4.2.2]
130506558  probable phosphoglucomutase, cytoplasmic 1 [KO:K01835] [EC:5.4.2.2]
130506835  probable phosphoglucomutase, cytoplasmic 1 [KO:K01835] [EC:5.4.2.2]
108848881  ribose-phosphate pyrophosphokinase 5, chloroplastic [KO:K00948] [EC:2.7.6.1]
108839148  ribose-phosphate pyrophosphokinase 2, chloroplastic [KO:K00948] [EC:2.7.6.1]
108806876  ribose-phosphate pyrophosphokinase 1, chloroplastic [KO:K00948] [EC:2.7.6.1]
108857319  ribose-phosphate pyrophosphokinase 2, chloroplastic [KO:K00948] [EC:2.7.6.1]
108848320  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00131] [EC:1.2.1.9]
108824258  gluconokinase isoform X1 [KO:K00851] [EC:2.7.1.12]
108863280  LOW QUALITY PROTEIN: fructose-bisphosphate aldolase 8, cytosolic [KO:K01623] [EC:4.1.2.13]
108822059  fructose-bisphosphate aldolase 2, chloroplastic [KO:K01623] [EC:4.1.2.13]
108854423  fructose-bisphosphate aldolase 6, cytosolic [KO:K01623] [EC:4.1.2.13]
108854721  fructose-bisphosphate aldolase 2, chloroplastic [KO:K01623] [EC:4.1.2.13]
108816350  fructose-bisphosphate aldolase 4, cytosolic [KO:K01623] [EC:4.1.2.13]
108842858  fructose-bisphosphate aldolase 5, cytosolic [KO:K01623] [EC:4.1.2.13]
108813216  fructose-bisphosphate aldolase 3, chloroplastic [KO:K01623] [EC:4.1.2.13]
108811784  fructose-bisphosphate aldolase 1, chloroplastic isoform X1 [KO:K01623] [EC:4.1.2.13]
108835009  fructose-bisphosphate aldolase 1, chloroplastic [KO:K01623] [EC:4.1.2.13]
108848619  fructose-bisphosphate aldolase 8, cytosolic [KO:K01623] [EC:4.1.2.13]
108836888  fructose-bisphosphate aldolase 8, cytosolic [KO:K01623] [EC:4.1.2.13]
108825415  fructose-bisphosphate aldolase 2, chloroplastic [KO:K01623] [EC:4.1.2.13]
130497800  fructose-bisphosphate aldolase 8, cytosolic-like [KO:K01623] [EC:4.1.2.13]
130507354  fructose-bisphosphate aldolase 8, cytosolic [KO:K01623] [EC:4.1.2.13]
130494641  thiol protease aleurain-like [KO:K01623] [EC:4.1.2.13]
108829788  fructose-1,6-bisphosphatase, chloroplastic [KO:K03841] [EC:3.1.3.11]
108856520  fructose-1,6-bisphosphatase 1, chloroplastic [KO:K03841] [EC:3.1.3.11]
108862890  fructose-1,6-bisphosphatase, cytosolic [KO:K03841] [EC:3.1.3.11]
108856572  fructose-1,6-bisphosphatase, cytosolic [KO:K03841] [EC:3.1.3.11]
130498546  fructose-1,6-bisphosphatase, cytosolic-like [KO:K03841] [EC:3.1.3.11]
130506716  fructose-1,6-bisphosphatase, cytosolic-like [KO:K03841] [EC:3.1.3.11]
108823438  ATP-dependent 6-phosphofructokinase 7 [KO:K00850] [EC:2.7.1.11]
108821342  ATP-dependent 6-phosphofructokinase 5, chloroplastic-like [KO:K00850] [EC:2.7.1.11]
108842809  ATP-dependent 6-phosphofructokinase 1 [KO:K00850] [EC:2.7.1.11]
108854269  ATP-dependent 6-phosphofructokinase 4, chloroplastic [KO:K00850] [EC:2.7.1.11]
108830733  ATP-dependent 6-phosphofructokinase 5, chloroplastic-like [KO:K00850] [EC:2.7.1.11]
108811963  ATP-dependent 6-phosphofructokinase 5, chloroplastic [KO:K00850] [EC:2.7.1.11]
108847458  ATP-dependent 6-phosphofructokinase 7 [KO:K00850] [EC:2.7.1.11]
108812175  ATP-dependent 6-phosphofructokinase 2 [KO:K00850] [EC:2.7.1.11]
108836385  ATP-dependent 6-phosphofructokinase 6 [KO:K00850] [EC:2.7.1.11]
108843474  ATP-dependent 6-phosphofructokinase 3 [KO:K00850] [EC:2.7.1.11]
108845730  ATP-dependent 6-phosphofructokinase 7 [KO:K00850] [EC:2.7.1.11]
130503866  ATP-dependent 6-phosphofructokinase 3 [KO:K00850] [EC:2.7.1.11]
130504553  ATP-dependent 6-phosphofructokinase 7-like [KO:K00850] [EC:2.7.1.11]
130505165  ATP-dependent 6-phosphofructokinase 7-like [KO:K00850] [EC:2.7.1.11]
130507115  ATP-dependent 6-phosphofructokinase 5, chloroplastic [KO:K00850] [EC:2.7.1.11]
130507168  ATP-dependent 6-phosphofructokinase 7-like [KO:K00850] [EC:2.7.1.11]
130508209  ATP-dependent 6-phosphofructokinase 6 [KO:K00850] [EC:2.7.1.11]
108842775  ATP-dependent 6-phosphofructokinase 7-like [KO:K00850] [EC:2.7.1.11]
108825561  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta 2 [KO:K00895] [EC:2.7.1.90]
108814108  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 2 [KO:K00895] [EC:2.7.1.90]
108813558  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 1 [KO:K00895] [EC:2.7.1.90]
108820238  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta 1 [KO:K00895] [EC:2.7.1.90]
108822659  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 1 [KO:K00895] [EC:2.7.1.90]
108837103  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta 1 [KO:K00895] [EC:2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
rsz00010  Glycolysis / Gluconeogenesis
rsz00040  Pentose and glucuronate interconversions
rsz00052  Galactose metabolism
rsz00230  Purine metabolism
rsz00240  Pyrimidine metabolism
rsz00340  Histidine metabolism
rsz00630  Glyoxylate and dicarboxylate metabolism
rsz00750  Vitamin B6 metabolism
KO pathway
ko00030   
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