PATHWAY: rup01100 Help Entry rup01100                    Pathway                                 Name Metabolic pathways - Runella sp. SP2 Class BRITE hierarchy Pathway map rup01100   Metabolic pathways Module rup_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:rup01100] rup_M00002   Glycolysis, core module involving three-carbon compounds [PATH:rup01100] rup_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rup01100] rup_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:rup01100] rup_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:rup01100] rup_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:rup01100] rup_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rup01100] rup_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rup01100] rup_M00012   Glyoxylate cycle [PATH:rup01100] rup_M00015   Proline biosynthesis, glutamate => proline [PATH:rup01100] rup_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:rup01100] rup_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:rup01100] rup_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:rup01100] rup_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:rup01100] rup_M00026   Histidine biosynthesis, PRPP => histidine [PATH:rup01100] rup_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:rup01100] rup_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:rup01100] rup_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:rup01100] rup_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:rup01100] rup_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:rup01100] rup_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:rup01100] rup_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:rup01100] rup_M00064   ADP-L-glycero-D-manno-heptose biosynthesis [PATH:rup01100] rup_M00082   Fatty acid biosynthesis, initiation [PATH:rup01100] rup_M00083   Fatty acid biosynthesis, elongation [PATH:rup01100] rup_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:rup01100] rup_M00087   beta-Oxidation [PATH:rup01100] rup_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:rup01100] rup_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:rup01100] rup_M00119   Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:rup01100] rup_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:rup01100] rup_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:rup01100] rup_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:rup01100] rup_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:rup01100] rup_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:rup01100] rup_M00155   Cytochrome c oxidase, prokaryotes [PATH:rup01100] rup_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:rup01100] rup_M00168   CAM (Crassulacean acid metabolism), dark [PATH:rup01100] rup_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rup01100] rup_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:rup01100] rup_M00527   Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH:rup01100] rup_M00535   Isoleucine biosynthesis, pyruvate => 2-oxobutanoate [PATH:rup01100] rup_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:rup01100] rup_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:rup01100] rup_M00621   Glycine cleavage system [PATH:rup01100] rup_M00631   D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:rup01100] rup_M00793   dTDP-L-rhamnose biosynthesis [PATH:rup01100] rup_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:rup01100] rup_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:rup01100] rup_M00970   Proline degradation, proline => glutamate [PATH:rup01100] rup_M00972   Proline metabolism [PATH:rup01100] Organism Runella sp. SP2 [GN:rup] Related pathway rup00010   Glycolysis / Gluconeogenesis rup00020   Citrate cycle (TCA cycle) rup00030   Pentose phosphate pathway rup00040   Pentose and glucuronate interconversions rup00051   Fructose and mannose metabolism rup00052   Galactose metabolism rup00053   Ascorbate and aldarate metabolism rup00061   Fatty acid biosynthesis rup00071   Fatty acid degradation rup00100   Steroid biosynthesis rup00130   Ubiquinone and other terpenoid-quinone biosynthesis rup00190   Oxidative phosphorylation rup00220   Arginine biosynthesis rup00230   Purine metabolism rup00240   Pyrimidine metabolism rup00250   Alanine, aspartate and glutamate metabolism rup00260   Glycine, serine and threonine metabolism rup00261   Monobactam biosynthesis rup00270   Cysteine and methionine metabolism rup00280   Valine, leucine and isoleucine degradation rup00290   Valine, leucine and isoleucine biosynthesis rup00300   Lysine biosynthesis rup00310   Lysine degradation rup00311   Penicillin and cephalosporin biosynthesis rup00330   Arginine and proline metabolism rup00332   Carbapenem biosynthesis rup00340   Histidine metabolism rup00350   Tyrosine metabolism rup00360   Phenylalanine metabolism rup00361   Chlorocyclohexane and chlorobenzene degradation rup00362   Benzoate degradation rup00364   Fluorobenzoate degradation rup00380   Tryptophan metabolism rup00400   Phenylalanine, tyrosine and tryptophan biosynthesis rup00401   Novobiocin biosynthesis rup00405   Phenazine biosynthesis rup00410   beta-Alanine metabolism rup00430   Taurine and hypotaurine metabolism rup00440   Phosphonate and phosphinate metabolism rup00450   Selenocompound metabolism rup00460   Cyanoamino acid metabolism rup00470   D-Amino acid metabolism rup00480   Glutathione metabolism rup00500   Starch and sucrose metabolism rup00511   Other glycan degradation rup00520   Amino sugar and nucleotide sugar metabolism rup00521   Streptomycin biosynthesis rup00523   Polyketide sugar unit biosynthesis rup00525   Acarbose and validamycin biosynthesis rup00540   Lipopolysaccharide biosynthesis rup00541   O-Antigen nucleotide sugar biosynthesis rup00542   O-Antigen repeat unit biosynthesis rup00543   Exopolysaccharide biosynthesis rup00550   Peptidoglycan biosynthesis rup00552   Teichoic acid biosynthesis rup00561   Glycerolipid metabolism rup00562   Inositol phosphate metabolism rup00564   Glycerophospholipid metabolism rup00592   alpha-Linolenic acid metabolism rup00600   Sphingolipid metabolism rup00620   Pyruvate metabolism rup00623   Toluene degradation rup00625   Chloroalkane and chloroalkene degradation rup00630   Glyoxylate and dicarboxylate metabolism rup00640   Propanoate metabolism rup00643   Styrene degradation rup00650   Butanoate metabolism rup00660   C5-Branched dibasic acid metabolism rup00670   One carbon pool by folate rup00680   Methane metabolism rup00710   Carbon fixation by Calvin cycle rup00720   Other carbon fixation pathways rup00730   Thiamine metabolism rup00740   Riboflavin metabolism rup00750   Vitamin B6 metabolism rup00760   Nicotinate and nicotinamide metabolism rup00770   Pantothenate and CoA biosynthesis rup00780   Biotin metabolism rup00785   Lipoic acid metabolism rup00790   Folate biosynthesis rup00860   Porphyrin metabolism rup00900   Terpenoid backbone biosynthesis rup00906   Carotenoid biosynthesis rup00907   Pinene, camphor and geraniol degradation rup00910   Nitrogen metabolism rup00920   Sulfur metabolism rup00930   Caprolactam degradation rup00946   Degradation of flavonoids rup00999   Biosynthesis of various plant secondary metabolites rup01040   Biosynthesis of unsaturated fatty acids rup01053   Biosynthesis of siderophore group nonribosomal peptides KO pathway ko01100     LinkDB All DBs

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