KEGG   PATHWAY: saa00020
Entry
saa00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Staphylococcus aureus subsp. aureus USA300_FPR3757 (CA-MRSA)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
saa00020  Citrate cycle (TCA cycle)
saa00020

Module
saa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:saa00020]
saa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:saa00020]
saa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:saa00020]
saa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:saa00020]
saa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:saa00020]
Other DBs
GO: 0006099
Organism
Staphylococcus aureus subsp. aureus USA300_FPR3757 (CA-MRSA) [GN:saa]
Gene
SAUSA300_1641  gltA; citrate synthase II [KO:K01647] [EC:2.3.3.1]
SAUSA300_1246  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SAUSA300_1640  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
SAUSA300_1306  sucA; 2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
SAUSA300_1305  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
SAUSA300_1467  lpdA; 2-oxoisovalerate dehydrogenase, E3 component, lipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SAUSA300_0996  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SAUSA300_1182  pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SAUSA300_1183  pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SAUSA300_1139  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
SAUSA300_1138  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
SAUSA300_1047  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SAUSA300_1048  sdhB; succinate dehydrogenase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
SAUSA300_1046  sdhC; succinate dehydrogenase, cytochrome b-558 subunit [KO:K00241]
SAUSA300_1801  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
SAUSA300_2312  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
SAUSA300_2541  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
SAUSA300_1014  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
SAUSA300_1731  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
SAUSA300_0993  pdhA; pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
SAUSA300_0994  pdhB; pyruvate dehydrogenase E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
SAUSA300_0995  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
saa00010  Glycolysis / Gluconeogenesis
saa00053  Ascorbate and aldarate metabolism
saa00061  Fatty acid biosynthesis
saa00071  Fatty acid degradation
saa00190  Oxidative phosphorylation
saa00220  Arginine biosynthesis
saa00250  Alanine, aspartate and glutamate metabolism
saa00280  Valine, leucine and isoleucine degradation
saa00350  Tyrosine metabolism
saa00470  D-Amino acid metabolism
saa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system