KEGG   PATHWAY: sbv00020
Entry
sbv00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Salmonella bongori serovar 48:z41:--
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sbv00020  Citrate cycle (TCA cycle)
sbv00020

Module
sbv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sbv00020]
sbv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sbv00020]
sbv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sbv00020]
Other DBs
GO: 0006099
Organism
Salmonella bongori serovar 48:z41:-- [GN:sbv]
Gene
N643_03140  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
N643_07580  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
N643_03400  hydratase [KO:K01681] [EC:4.2.1.3]
N643_00735  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
N643_05110  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
N643_03165  2-oxoglutarate dehydrogenase E1 [KO:K00164] [EC:1.2.4.2]
N643_00715  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
N643_03180  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
N643_03175  sucC; malate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
N643_03155  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
N643_03160  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
N643_03145  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
N643_03150  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
N643_19180  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
N643_19175  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
N643_19170  fumarate reductase subunit C [KO:K00246]
N643_19165  fumarate reductase subunit D [KO:K00247]
N643_06195  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
N643_18895  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
N643_06200  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
N643_05845  hypothetical protein [KO:K01675] [EC:4.2.1.2]
N643_13155  mannitol repressor [KO:K01774] [EC:4.2.1.2]
N643_14700  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
N643_15415  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
N643_00705  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
N643_00710  aceF; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
N643_07170  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sbv00010  Glycolysis / Gluconeogenesis
sbv00053  Ascorbate and aldarate metabolism
sbv00061  Fatty acid biosynthesis
sbv00071  Fatty acid degradation
sbv00190  Oxidative phosphorylation
sbv00220  Arginine biosynthesis
sbv00250  Alanine, aspartate and glutamate metabolism
sbv00280  Valine, leucine and isoleucine degradation
sbv00350  Tyrosine metabolism
sbv00470  D-Amino acid metabolism
sbv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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