KEGG   PATHWAY: sea00020
Entry
sea00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Salmonella enterica subsp. enterica serovar Agona SL483
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sea00020  Citrate cycle (TCA cycle)
sea00020

Module
sea_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sea00020]
sea_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sea00020]
sea_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sea00020]
sea_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sea00020]
sea_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sea00020]
Other DBs
GO: 0006099
Organism
Salmonella enterica subsp. enterica serovar Agona SL483 [GN:sea]
Gene
SeAg_B0764  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
SeAg_B1437  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
SeAg_B0181  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SeAg_B1946  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
SeAg_B0769  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
SeAg_B0770  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex [KO:K00658] [EC:2.3.1.61]
SeAg_B0176  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SeAg_B0772  succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
SeAg_B0771  sucC; succinate-CoA ligase, beta subunit [KO:K01903] [EC:6.2.1.5]
SeAg_B0767  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SeAg_B0768  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SeAg_B0765  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
SeAg_B0766  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
SeAg_B4621  frdA; fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
SeAg_B4620  frdB; fumarate reductase, iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
SeAg_B4619  frdC; fumarate reductase, cytochrome b subunit [KO:K00246]
SeAg_B4618  fumarate reductase subunit D [KO:K00247]
SeAg_B1706  fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
SeAg_B4564  fumB; fumarate hydratase [KO:K01676] [EC:4.2.1.2]
SeAg_B0798  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
SeAg_B0797  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta region [KO:K01678] [EC:4.2.1.2]
SeAg_B1705  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
SeAg_B1783  conserved hypothetical protein [KO:K01675] [EC:4.2.1.2]
SeAg_B3550  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
SeAg_B3701  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
SeAg_B0174  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
SeAg_B0175  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
SeAg_B1505  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sea00010  Glycolysis / Gluconeogenesis
sea00053  Ascorbate and aldarate metabolism
sea00061  Fatty acid biosynthesis
sea00071  Fatty acid degradation
sea00190  Oxidative phosphorylation
sea00220  Arginine biosynthesis
sea00250  Alanine, aspartate and glutamate metabolism
sea00280  Valine, leucine and isoleucine degradation
sea00350  Tyrosine metabolism
sea00470  D-Amino acid metabolism
sea00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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