KEGG   PATHWAY: senh03030
Entry
senh03030                   Pathway                                
Name
DNA replication - Salmonella enterica subsp. enterica serovar Heidelberg CFSAN002069
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
senh03030  DNA replication
senh03030

Organism
Salmonella enterica subsp. enterica serovar Heidelberg CFSAN002069 [GN:senh]
Gene
CFSAN002069_22450  DNA polymerase III subunit theta [KO:K02345] [EC:2.7.7.7]
CFSAN002069_07825  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
CFSAN002069_23130  exonuclease [KO:K02342] [EC:2.7.7.7]
CFSAN002069_07990  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
CFSAN002069_06420  DNA polymerase III subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
CFSAN002069_03015  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
CFSAN002069_05610  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
CFSAN002069_09415  DNA polymerase III subunit psi [KO:K02344] [EC:2.7.7.7]
CFSAN002069_09810  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
CFSAN002069_12820  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
CFSAN002069_07395  DNA helicase [KO:K02314] [EC:5.6.2.3]
CFSAN002069_10870  DNA helicase [KO:K02314] [EC:5.6.2.3]
CFSAN002069_16085  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
CFSAN002069_10825  single-stranded DNA-binding protein [KO:K03111]
CFSAN002069_23365  single-stranded DNA-binding protein [KO:K03111]
CFSAN002069_07830  ribonuclease H [KO:K03469] [EC:3.1.26.4]
CFSAN002069_07995  rnhB; ribonuclease HII [KO:K03470] [EC:3.1.26.4]
CFSAN002069_12065  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
CFSAN002069_19625  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
CFSAN002069_13340  DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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