PATHWAY: serm01100 Help Entry serm01100                   Pathway                                 Name Metabolic pathways - Serratia sp. MYb239 Class BRITE hierarchy Pathway map serm01100   Metabolic pathways Module serm_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:serm01100] serm_M00002   Glycolysis, core module involving three-carbon compounds [PATH:serm01100] serm_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:serm01100] serm_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:serm01100] serm_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:serm01100] serm_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:serm01100] serm_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:serm01100] serm_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:serm01100] serm_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:serm01100] serm_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:serm01100] serm_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:serm01100] serm_M00012   Glyoxylate cycle [PATH:serm01100] serm_M00015   Proline biosynthesis, glutamate => proline [PATH:serm01100] serm_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:serm01100] serm_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:serm01100] serm_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:serm01100] serm_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:serm01100] serm_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:serm01100] serm_M00021   Cysteine biosynthesis, serine => cysteine [PATH:serm01100] serm_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:serm01100] serm_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:serm01100] serm_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:serm01100] serm_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:serm01100] serm_M00026   Histidine biosynthesis, PRPP => histidine [PATH:serm01100] serm_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:serm01100] serm_M00034   Methionine salvage pathway [PATH:serm01100] serm_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:serm01100] serm_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:serm01100] serm_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:serm01100] serm_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:serm01100] serm_M00051   De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:serm01100] serm_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:serm01100] serm_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:serm01100] serm_M00060   KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:serm01100] serm_M00061   D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:serm01100] serm_M00063   CMP-KDO biosynthesis [PATH:serm01100] serm_M00064   ADP-L-glycero-D-manno-heptose biosynthesis [PATH:serm01100] serm_M00082   Fatty acid biosynthesis, initiation [PATH:serm01100] serm_M00083   Fatty acid biosynthesis, elongation [PATH:serm01100] serm_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:serm01100] serm_M00087   beta-Oxidation [PATH:serm01100] serm_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:serm01100] serm_M00096   C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:serm01100] serm_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:serm01100] serm_M00116   Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:serm01100] serm_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:serm01100] serm_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:serm01100] serm_M00119   Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:serm01100] serm_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:serm01100] serm_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:serm01100] serm_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:serm01100] serm_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:serm01100] serm_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:serm01100] serm_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:serm01100] serm_M00127   Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:serm01100] serm_M00133   Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:serm01100] serm_M00136   GABA biosynthesis, prokaryotes, putrescine => GABA [PATH:serm01100] serm_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:serm01100] serm_M00149   Succinate dehydrogenase, prokaryotes [PATH:serm01100] serm_M00150   Fumarate reductase, prokaryotes [PATH:serm01100] serm_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:serm01100] serm_M00168   CAM (Crassulacean acid metabolism), dark [PATH:serm01100] serm_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:serm01100] serm_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:serm01100] serm_M00338   Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:serm01100] serm_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:serm01100] serm_M00417   Cytochrome o ubiquinol oxidase [PATH:serm01100] serm_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:serm01100] serm_M00530   Dissimilatory nitrate reduction, nitrate => ammonia [PATH:serm01100] serm_M00531   Assimilatory nitrate reduction, nitrate => ammonia [PATH:serm01100] serm_M00533   Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate [PATH:serm01100] serm_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:serm01100] serm_M00551   Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol [PATH:serm01100] serm_M00552   D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:serm01100] serm_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:serm01100] serm_M00555   Betaine biosynthesis, choline => betaine [PATH:serm01100] serm_M00568   Catechol ortho-cleavage, catechol => 3-oxoadipate [PATH:serm01100] serm_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:serm01100] serm_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:serm01100] serm_M00621   Glycine cleavage system [PATH:serm01100] serm_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:serm01100] serm_M00761   Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:serm01100] serm_M00790   Pyrrolnitrin biosynthesis, tryptophan => pyrrolnitrin [PATH:serm01100] serm_M00793   dTDP-L-rhamnose biosynthesis [PATH:serm01100] serm_M00837   Prodigiosin biosynthesis, L-proline => prodigiosin [PATH:serm01100] serm_M00844   Arginine biosynthesis, ornithine => arginine [PATH:serm01100] serm_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:serm01100] serm_M00878   Phenylacetate degradation, phenylaxetate => acetyl-CoA/succinyl-CoA [PATH:serm01100] serm_M00879   Arginine succinyltransferase pathway, arginine => glutamate [PATH:serm01100] serm_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:serm01100] serm_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:serm01100] serm_M00899   Thiamine salvage pathway, HMP/HET => TMP [PATH:serm01100] serm_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:serm01100] serm_M00918   Aerobactin biosynthesis, lysine => aerobactin [PATH:serm01100] serm_M00919   Ectoine degradation, ectoine => aspartate [PATH:serm01100] serm_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:serm01100] serm_M00948   Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate [PATH:serm01100] serm_M00958   Adenine ribonucleotide degradation, AMP => Urate [PATH:serm01100] serm_M00959   Guanine ribonucleotide degradation, GMP => Urate [PATH:serm01100] serm_M00970   Proline degradation, proline => glutamate [PATH:serm01100] serm_M00975   Betaine degradation, bacteria, betaine => pyruvate [PATH:serm01100] Organism Serratia sp. MYb239 [GN:serm] Related pathway serm00010   Glycolysis / Gluconeogenesis serm00020   Citrate cycle (TCA cycle) serm00030   Pentose phosphate pathway serm00040   Pentose and glucuronate interconversions serm00051   Fructose and mannose metabolism serm00052   Galactose metabolism serm00053   Ascorbate and aldarate metabolism serm00061   Fatty acid biosynthesis serm00071   Fatty acid degradation serm00130   Ubiquinone and other terpenoid-quinone biosynthesis serm00190   Oxidative phosphorylation serm00220   Arginine biosynthesis serm00230   Purine metabolism serm00240   Pyrimidine metabolism serm00250   Alanine, aspartate and glutamate metabolism serm00260   Glycine, serine and threonine metabolism serm00261   Monobactam biosynthesis serm00270   Cysteine and methionine metabolism serm00280   Valine, leucine and isoleucine degradation serm00290   Valine, leucine and isoleucine biosynthesis serm00300   Lysine biosynthesis serm00310   Lysine degradation serm00330   Arginine and proline metabolism serm00332   Carbapenem biosynthesis serm00333   Prodigiosin biosynthesis serm00340   Histidine metabolism serm00350   Tyrosine metabolism serm00360   Phenylalanine metabolism serm00361   Chlorocyclohexane and chlorobenzene degradation serm00362   Benzoate degradation serm00364   Fluorobenzoate degradation serm00380   Tryptophan metabolism serm00400   Phenylalanine, tyrosine and tryptophan biosynthesis serm00401   Novobiocin biosynthesis serm00404   Staurosporine biosynthesis serm00405   Phenazine biosynthesis serm00410   beta-Alanine metabolism serm00430   Taurine and hypotaurine metabolism serm00440   Phosphonate and phosphinate metabolism serm00450   Selenocompound metabolism serm00460   Cyanoamino acid metabolism serm00470   D-Amino acid metabolism serm00480   Glutathione metabolism serm00500   Starch and sucrose metabolism serm00511   Other glycan degradation serm00520   Amino sugar and nucleotide sugar metabolism serm00521   Streptomycin biosynthesis serm00523   Polyketide sugar unit biosynthesis serm00525   Acarbose and validamycin biosynthesis serm00540   Lipopolysaccharide biosynthesis serm00541   O-Antigen nucleotide sugar biosynthesis serm00542   O-Antigen repeat unit biosynthesis serm00543   Exopolysaccharide biosynthesis serm00550   Peptidoglycan biosynthesis serm00552   Teichoic acid biosynthesis serm00561   Glycerolipid metabolism serm00562   Inositol phosphate metabolism serm00564   Glycerophospholipid metabolism serm00565   Ether lipid metabolism serm00592   alpha-Linolenic acid metabolism serm00600   Sphingolipid metabolism serm00620   Pyruvate metabolism serm00622   Xylene degradation serm00623   Toluene degradation serm00625   Chloroalkane and chloroalkene degradation serm00626   Naphthalene degradation serm00627   Aminobenzoate degradation serm00630   Glyoxylate and dicarboxylate metabolism serm00633   Nitrotoluene degradation serm00640   Propanoate metabolism serm00650   Butanoate metabolism serm00660   C5-Branched dibasic acid metabolism serm00670   One carbon pool by folate serm00680   Methane metabolism serm00710   Carbon fixation by Calvin cycle serm00720   Other carbon fixation pathways serm00730   Thiamine metabolism serm00740   Riboflavin metabolism serm00750   Vitamin B6 metabolism serm00760   Nicotinate and nicotinamide metabolism serm00770   Pantothenate and CoA biosynthesis serm00780   Biotin metabolism serm00785   Lipoic acid metabolism serm00790   Folate biosynthesis serm00791   Atrazine degradation serm00860   Porphyrin metabolism serm00900   Terpenoid backbone biosynthesis serm00903   Limonene degradation serm00907   Pinene, camphor and geraniol degradation serm00910   Nitrogen metabolism serm00920   Sulfur metabolism serm00930   Caprolactam degradation serm00946   Degradation of flavonoids serm00997   Biosynthesis of various other secondary metabolites serm00999   Biosynthesis of various plant secondary metabolites serm01040   Biosynthesis of unsaturated fatty acids serm01053   Biosynthesis of siderophore group nonribosomal peptides serm01055   Biosynthesis of vancomycin group antibiotics KO pathway ko01100     LinkDB All DBs

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