KEGG   PATHWAY: sfs00020
Entry
sfs00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Shigella flexneri Shi06HN006 (serotype Yv)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sfs00020  Citrate cycle (TCA cycle)
sfs00020

Module
sfs_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sfs00020]
sfs_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sfs00020]
sfs_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sfs00020]
sfs_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sfs00020]
sfs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sfs00020]
Other DBs
GO: 0006099
Organism
Shigella flexneri Shi06HN006 (serotype Yv) [GN:sfs]
Gene
SFyv_0814  GltA [KO:K01647] [EC:2.3.3.1]
SFyv_1894  AcnA [KO:K01681] [EC:4.2.1.3]
SFyv_1254  enzyme [KO:K01681] [EC:4.2.1.3]
SFyv_0154  AcnB [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SFyv_1720  IcdA [KO:K00031] [EC:1.1.1.42]
SFyv_0804  SucA [KO:K00164] [EC:1.2.4.2]
SFyv_0801  SucB [KO:K00658] [EC:2.3.1.61]
SFyv_0147  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SFyv_0797  SucD [KO:K01902] [EC:6.2.1.5]
SFyv_0799  Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
SFyv_0809  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SFyv_0807  SdhB [KO:K00240] [EC:1.3.5.1]
SFyv_0812  succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
SFyv_0810  hypothetical protein [KO:K00242]
SFyv_6258  FrdA [KO:K00244] [EC:1.3.5.1]
SFyv_6257  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
SFyv_6256  Fumarate reductase subunit C [KO:K00246]
SFyv_6255  Fumarate reductase subunit D [KO:K00247]
SFyv_2390  FumA [KO:K01676] [EC:4.2.1.2]
SFyv_5951  FumB [KO:K01676] [EC:4.2.1.2]
SFyv_2389  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
SFyv_2494  hypothetical protein [KO:K01675] [EC:4.2.1.2]
SFyv_4231  YggD [KO:K01774] [EC:4.2.1.2]
SFyv_4749  Mdh [KO:K00024] [EC:1.1.1.37]
SFyv_3331  malate dehydrogenase [KO:K00116] [EC:1.1.5.4]
SFyv_4939  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
SFyv_0143  AceE [KO:K00163] [EC:1.2.4.1]
SFyv_0145  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
SFyv_2668  YdbK [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sfs00010  Glycolysis / Gluconeogenesis
sfs00053  Ascorbate and aldarate metabolism
sfs00061  Fatty acid biosynthesis
sfs00071  Fatty acid degradation
sfs00190  Oxidative phosphorylation
sfs00220  Arginine biosynthesis
sfs00250  Alanine, aspartate and glutamate metabolism
sfs00280  Valine, leucine and isoleucine degradation
sfs00350  Tyrosine metabolism
sfs00470  D-Amino acid metabolism
sfs00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system