KEGG   PATHWAY: shq02010
Entry
shq02010                    Pathway                                
Name
ABC transporters - Shigella sp. PAMC 28760
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
shq02010  ABC transporters
shq02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Shigella sp. PAMC 28760 [GN:shq]
Gene
A0259_15865  thiosulfate transporter subunit [KO:K02048]
A0259_01160  sulfate transporter subunit [KO:K23163]
A0259_15860  sulfate/thiosulfate transporter subunit [KO:K02046]
A0259_15855  cysW; sulfate/thiosulfate transporter permease subunit [KO:K02047]
A0259_15850  sulfate/thiosulfate transporter subunit [KO:K02045] [EC:7.3.2.3]
A0259_05470  tauA; taurine ABC transporter substrate-binding protein [KO:K15551]
A0259_05480  taurine transporter subunit [KO:K15552]
A0259_05475  tauB; taurine transporter ATP-binding subunit [KO:K10831] [EC:7.6.2.7]
A0259_08790  alkanesulfonate transporter substrate-binding subunit [KO:K15553]
A0259_08780  ssuC; alkanesulfonate transporter permease subunit [KO:K15554]
A0259_08775  ssuB; aliphatic sulfonate ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
A0259_04170  tbpA; thiamine ABC transporter substrate-binding protein [KO:K02064]
A0259_04165  thiP; thiamine ABC transporter permease [KO:K02063]
A0259_04160  thiQ; thiamine ABC transporter ATP-binding protein [KO:K02062] [EC:7.6.2.15]
A0259_09765  potD; spermidine/putrescine ABC transporter substrate-binding protein [KO:K11069]
A0259_09770  potC; spermidine/putrescine ABC transporter permease PotC [KO:K11070]
A0259_09775  potB; spermidine/putrescine ABC transporter permease [KO:K11071]
A0259_09780  potA; putrescine/spermidine ABC transporter ATP-binding protein [KO:K11072] [EC:7.6.2.11]
A0259_08365  spermidine/putrescine ABC transporter substrate-binding protein [KO:K11073]
A0259_08380  spermidine/putrescine ABC transporter permease [KO:K11074]
A0259_08375  spermidine/putrescine ABC transporter permease [KO:K11075]
A0259_08370  potG; putrescine transporter ATP-binding subunit [KO:K11076] [EC:7.6.2.16]
A0259_16990  proX; glycine betaine ABC transporter substrate-binding protein [KO:K02002]
A0259_16985  proline/betaine ABC transporter permease ProW [KO:K02001]
A0259_16980  glycine betaine/L-proline ABC transporter ATP-binding protein [KO:K02000] [EC:7.6.2.9]
A0259_14465  osmoprotectant uptake system substrate-binding protein [KO:K05845]
A0259_14450  osmoprotectant uptake system permease [KO:K05846]
A0259_14460  osmoprotectant uptake system permease [KO:K05846]
A0259_14455  ATP-binding protein [KO:K05847] [EC:7.6.2.9]
A0259_01770  malE; maltose ABC transporter substrate-binding protein MalE [KO:K10108]
A0259_01765  malF; maltose transporter [KO:K10109]
A0259_01760  malG; maltose transporter permease [KO:K10110]
A0259_01780  maltose/maltodextrin transporter ATP-binding protein [KO:K10111] [EC:7.5.2.-]
A0259_10715  sugar ABC transporter ATP-binding protein [KO:K10112] [EC:7.5.2.-]
A0259_16465  sugar ABC transporter substrate-binding protein [KO:K23545]
A0259_16455  sugar ABC transporter permease [KO:K23546]
A0259_16460  heme ABC transporter ATP-binding protein [KO:K23547]
A0259_19710  ABC transporter substrate-binding protein [KO:K07323]
A0259_19715  outer membrane lipid asymmetry maintenance protein MlaD [KO:K02067]
A0259_19720  ABC transporter permease [KO:K02066]
A0259_19705  phospholipid ABC transporter substrate-binding protein [KO:K07122]
A0259_19725  ABC transporter ATP-binding protein [KO:K02065]
A0259_00220  D-ribose ABC transporter substrate-binding protein [KO:K10439]
A0259_17600  LacI family transcriptional regulator [KO:K10439]
A0259_00215  rbsC; ribose ABC transporter permease [KO:K10440]
A0259_17605  ribose ABC transporter permease [KO:K10440]
A0259_00210  ribose ABC transporter ATP-binding protein RbsA [KO:K10441] [EC:7.5.2.7]
A0259_17610  D-ribose transporter ATP-binding protein [KO:K10441] [EC:7.5.2.7]
A0259_00205  D-ribose pyranase [KO:K06726] [EC:5.4.99.62]
A0259_13615  sugar ABC transporter substrate-binding protein [KO:K10537]
A0259_13605  araH; L-arabinose ABC transporter permease AraH [KO:K10538]
A0259_13610  araG; L-arabinose transporter ATP-binding protein [KO:K10539] [EC:7.5.2.12]
A0259_02790  sugar ABC transporter substrate-binding protein [KO:K23508]
A0259_02805  sugar ABC transporter permease YjfF [KO:K23509]
A0259_02800  sugar ABC transporter permease [KO:K23509]
A0259_02795  sugar ABC transporter ATP-binding protein [KO:K10820] [EC:7.5.2.9]
A0259_14550  mglC; beta-methylgalactoside transporter permease [KO:K10541]
A0259_14555  sugar ABC transporter ATP-binding protein [KO:K10542] [EC:7.5.2.11]
A0259_21655  xylF; D-xylose transporter subunit XylF [KO:K10543]
A0259_21665  sugar ABC transporter permease [KO:K10544]
A0259_02065  allose ABC transporter [KO:K10549]
A0259_02055  allose ABC transporter [KO:K10550]
A0259_02060  allose ABC transporter ATP-binding protein [KO:K10551] [EC:7.5.2.8]
A0259_21015  glycerol-3-phosphate ABC transporter substrate-binding protein [KO:K05813]
A0259_21010  glycerol-3-phosphate transporter permease [KO:K05814]
A0259_21005  glycerol-3-phosphate transporter [KO:K05815]
A0259_21000  ugpC; glycerol-3-phosphate transporter ATP-binding subunit [KO:K05816] [EC:7.6.2.10]
A0259_00105  phosphate ABC transporter substrate-binding protein [KO:K02040]
A0259_00100  pstC; phosphate transporter permease subunit PstC [KO:K02037]
A0259_00095  pstA; phosphate transporter permease subunit PtsA [KO:K02038]
A0259_00090  phosphate ABC transporter ATP-binding protein [KO:K02036] [EC:7.3.2.1]
A0259_02145  phosphonate ABC transporter substrate-binding protein [KO:K02044]
A0259_02140  phosphonate ABC transporter, permease protein PhnE [KO:K02042]
A0259_02150  phosphonate ABC transporter ATP-binding protein [KO:K02041] [EC:7.3.2.2]
A0259_15370  histidine ABC transporter substrate-binding protein HisJ [KO:K10013]
A0259_15355  amino acid ABC transporter permease [KO:K10015]
A0259_15360  amino acid ABC transporter permease [KO:K10016]
A0259_15350  amino acid transporter [KO:K10017] [EC:7.4.2.1]
A0259_15365  histidine ABC transporter substrate-binding protein HisJ [KO:K10014]
A0259_08005  glnH; glutamine ABC transporter substrate-bindnig protein [KO:K10036]
A0259_08000  glnP; glutamine ABC transporter permease [KO:K10037]
A0259_07995  glnQ; glutamine ABC transporter ATP-binding protein [KO:K10038] [EC:7.4.2.1]
A0259_08395  arginine ABC transporter substrate-binding protein [KO:K09996]
A0259_08410  arginine ABC transporter substrate-binding protein [KO:K09997]
A0259_08400  artM; arginine transporter permease subunit ArtM [KO:K09998]
A0259_08405  arginine transporter permease subunit ArtQ [KO:K09999]
A0259_08415  arginine ABC transporter ATP-binding protein ArtP [KO:K10000] [EC:7.4.2.1]
A0259_06965  amino acid transporter [KO:K10001]
A0259_06955  amino acid ABC transporter permease [KO:K10002]
A0259_06960  amino acid ABC transporter permease [KO:K10003]
A0259_20080  amino acid ABC transporter substrate-binding protein [KO:K09969]
A0259_20085  amino acid ABC transporter permease [KO:K09970]
A0259_20090  amino acid ABC transporter permease [KO:K09971]
A0259_20095  ABC transporter ATP-binding protein [KO:K09972] [EC:7.4.2.1]
A0259_21045  leucine ABC transporter subunit substrate-binding protein LivK [KO:K01999]
A0259_21060  leucine ABC transporter subunit substrate-binding protein LivK [KO:K01999]
A0259_21040  branched-chain amino acid transporter permease subunit LivH [KO:K01997]
A0259_21035  livM; branched-chain amino acid ABC transporter permease [KO:K01998]
A0259_21030  livG; ABC transporter ATP-binding protein [KO:K01995]
A0259_21025  livF; ABC transporter ATP-binding protein [KO:K01996]
A0259_04835  metQ; DL-methionine transporter substrate-binding subunit [KO:K02073]
A0259_22270  hypothetical protein [KO:K02073]
A0259_04840  DL-methionine transporter permease subunit [KO:K02072]
A0259_04845  metN; DL-methionine transporter ATP-binding subunit [KO:K02071]
A0259_10290  oligopeptide ABC transporter substrate-binding protein OppA [KO:K15580]
A0259_10780  oligopeptide ABC transporter substrate-binding protein OppA [KO:K15580]
A0259_10295  oppB; oligopeptide transporter permease [KO:K15581]
A0259_10300  peptide ABC transporter permease [KO:K15582]
A0259_10305  oppD; oligopeptide transporter ATP-binding component [KO:K15583]
A0259_10310  oligopeptide ABC transporter ATP-binding protein OppF [KO:K10823]
A0259_21525  peptide ABC transporter substrate-binding protein [KO:K12368]
A0259_21515  peptide transporter [KO:K12369]
A0259_21510  peptide transporter [KO:K12370]
A0259_21505  dppD; peptide ABC transporter ATP-binding protein [KO:K12371]
A0259_21500  dppF; peptide ABC transporter ATP-binding protein [KO:K12372]
A0259_10590  peptide ABC transporter substrate-binding protein SapA [KO:K19226]
A0259_10585  peptide ABC transporter permease [KO:K19227]
A0259_10580  peptide ABC transporter permease [KO:K19228]
A0259_10575  peptide ABC transporter ATP-binding protein [KO:K19229]
A0259_10570  peptide ABC transporter ATP-binding protein [KO:K19230]
A0259_21140  nickel ABC transporter substrate-binding protein [KO:K15584]
A0259_21145  nickel ABC transporter permease subunit NikB [KO:K15585]
A0259_21150  nikC; nickel ABC transporter permease subunit NikC [KO:K15586]
A0259_21155  nikD; nickel import ATP-binding protein NikD [KO:K15587] [EC:7.2.2.11]
A0259_21160  nikE; nickel import ATP-binding protein NikE [KO:K10824] [EC:7.2.2.11]
A0259_08105  glutathione ABC transporter substrate-binding protein [KO:K13889]
A0259_08110  glutathione ABC transporter permease [KO:K13890]
A0259_08115  glutathione ABC transporter permease [KO:K13891]
A0259_08100  glutathione ABC transporter ATP-binding protein [KO:K13892]
A0259_14710  antibiotic ABC transporter substrate-binding protein [KO:K13893]
A0259_14715  microcin ABC transporter permease [KO:K13894]
A0259_14720  microcin ABC transporter permease [KO:K13895]
A0259_14725  microcin ABC transporter ATP-binding protein [KO:K13896]
A0259_03105  fecB; iron-dicitrate transporter substrate-binding subunit [KO:K23181]
A0259_03095  fecD; iron-dicitrate transporter subunit FecD [KO:K23182]
A0259_03100  fecC; iron-dicitrate transporter permease subunit [KO:K23183]
A0259_03090  iron ABC transporter [KO:K23184] [EC:7.2.2.18]
A0259_06640  Fe2+-enterobactin ABC transporter substrate-binding protein [KO:K23185]
A0259_06630  iron-enterobactin transporter [KO:K23186]
A0259_06625  iron-enterobactin transporter permease [KO:K23187]
A0259_06620  iron-enterobactin transporter ATP-binding protein [KO:K23188] [EC:7.2.2.17 7.2.2.-]
A0259_04610  iron-hydroxamate transporter substrate-binding subunit [KO:K23227]
A0259_04615  Fe3+-hydroxamate ABC transporter permease FhuB [KO:K23228]
A0259_04605  iron-hydroxamate transporter ATP-binding subunit [KO:K10829] [EC:7.2.2.16]
A0259_04640  cobalamin-binding protein [KO:K06858]
A0259_12610  vtamin B12-transporter permease [KO:K06073]
A0259_12600  vitamin B12-transporter ATPase [KO:K06074] [EC:7.6.2.8]
A0259_13410  znuA; zinc ABC transporter substrate-binding protein [KO:K09815]
A0259_13420  znuB; high-affinity zinc transporter membrane component [KO:K09816]
A0259_13415  znuC; Mn2+/Zn2+ABC transporter ATP-binding protein [KO:K09817] [EC:7.2.2.20]
A0259_11625  autoinducer 2-binding protein lsrB [KO:K10555]
A0259_11620  histidine kinase [KO:K10557]
A0259_18435  capsule biosynthesis protein [KO:K10107]
A0259_18495  polysialic acid transporter [KO:K09688]
A0259_18490  ABC transporter ATP-binding protein [KO:K09689] [EC:7.6.2.12]
A0259_09720  outer membrane-specific lipoprotein transporter subunit LolC [KO:K09808]
A0259_09730  outer membrane-specific lipoprotein transporter subunit LolE [KO:K09808]
A0259_09725  lolD; lipoprotein ABC transporter ATP-binding protein [KO:K09810] [EC:7.6.2.-]
A0259_14810  heme exporter protein CcmD [KO:K02196]
A0259_14815  heme ABC transporter permease [KO:K02195]
A0259_14820  heme exporter protein CcmB [KO:K02194]
A0259_14825  heme ABC exporter ATP-binding protein CcmA [KO:K02193] [EC:7.6.2.5]
A0259_02950  LPS export ABC transporter permease LptF [KO:K07091]
A0259_18640  LPS export ABC transporter permease LptF [KO:K07091]
A0259_02955  LPS export ABC transporter permease LptG [KO:K11720]
A0259_18635  LPS export ABC transporter permease LptG [KO:K11720]
A0259_19755  ABC transporter ATP-binding protein [KO:K06861] [EC:7.5.2.5]
A0259_21070  ftsX; cell division protein FtsX [KO:K09811]
A0259_21075  cell division ATP-binding protein FtsE [KO:K09812]
A0259_08675  lipid ABC transporter permease/ATP-binding protein [KO:K11085] [EC:7.5.2.6]
A0259_05910  multidrug ABC transporter ATP-binding protein [KO:K18889]
A0259_05915  multidrug ABC transporter permease/ATP-binding protein [KO:K18890]
A0259_08535  amino acid ABC transporter ATP-binding protein [KO:K16012]
A0259_08540  thiol reductant ABC exporter subunit CydD [KO:K16013]
A0259_08495  macrolide ABC transporter permease/ATP-binding protein MacB [KO:K05685] [EC:7.6.2.-]
A0259_14880  multidrug ABC transporter permease/ATP-binding protein [KO:K06159]
A0259_11535  multidrug ABC transporter ATP-binding protein [KO:K02471]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
PMID:18424520
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
PMID:18375759
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
PMID:10557362
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
PMID:11731493
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
PMID:16135226
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
PMID:11929526
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
PMID:18326572
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
PMID:16109926
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
PMID:17873039
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
PMID:17214741
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
PMID:18805970
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   
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