KEGG   PATHWAY: sid03030
Entry
sid03030                    Pathway                                
Name
DNA replication - Sulfolobus islandicus M.16.4
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
sid03030  DNA replication
sid03030

Organism
Sulfolobus islandicus M.16.4 [GN:sid]
Gene
M164_2048  TOPRIM domain protein [KO:K02316] [EC:2.7.7.101]
M164_0197  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
M164_1573  DNA polymerase B region [KO:K02319] [EC:2.7.7.7]
M164_2047  DNA polymerase B exonuclease [KO:K02319] [EC:2.7.7.7]
M164_0814  DNA polymerase B region [KO:K02319] [EC:2.7.7.7]
M164_1359  MCM family protein [KO:K10726] [EC:5.6.2.3]
M164_1162  DNA primase small subunit [KO:K02683] [EC:2.7.7.102]
M164_1568  DNA primase, large subunit [KO:K18882]
M164_1745  proliferating cell nuclear antigen PcnA [KO:K04802]
M164_1163  proliferating cell nuclear antigen PcnA [KO:K04802]
M164_1753  proliferating cell nuclear antigen protein-like protein [KO:K04802]
M164_1366  Replication factor C [KO:K04801]
M164_1365  AAA ATPase central domain protein [KO:K04800]
M164_1965  XPG I domain protein [KO:K04799] [EC:3.1.-.-]
M164_1953  DNA ligase I, ATP-dependent Dnl1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

DBGET integrated database retrieval system