KEGG   PATHWAY: skr03060
Entry
skr03060                    Pathway                                
Name
Protein export - Sphingomonas koreensis
Description
The protein export is the active transport of proteins from the cytoplasm to the exterior of the cell, or to the periplasmic compartment in Gram-negative bacteria. The sec dependent pathway is the general protein export system that transports newly synthesized proteins into or across the cell membrane. The translocation channel is formed from a conserved trimeric membrane protein complex, called the Sec61/SecY complex. The twin-arginine translocation (Tat) pathway is another protein transport system that transports folded proteins in bacteria, archaea, and chloroplasts. Many Tat systems comprise three functionally different membrane proteins, TatA, TatB, and TatC, but TatA and TatE seem to have overlapping functions, with TatA having by far the more important role.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
skr03060  Protein export
skr03060

Other DBs
GO: 0043952 0043953
Organism
Sphingomonas koreensis [GN:skr]
Gene
BRX40_17890  preprotein translocase subunit SecY [KO:K03076]
BRX40_19390  preprotein translocase subunit SecE [KO:K03073]
BRX40_15135  preprotein translocase subunit SecG [KO:K03075]
BRX40_18830  protein-export membrane protein SecD [KO:K03072]
BRX40_18825  protein-export membrane protein SecF [KO:K03074]
BRX40_18835  preprotein translocase subunit YajC [KO:K03210]
BRX40_10860  membrane protein insertase YidC [KO:K03217]
BRX40_18550  preprotein translocase subunit SecA [KO:K03070] [EC:7.4.2.8]
BRX40_10810  protein-export chaperone SecB [KO:K03071]
BRX40_15560  signal recognition particle protein [KO:K03106] [EC:3.6.5.4]
BRX40_17785  ffs; signal recognition particle sRNA small type [KO:K01983]
BRX40_15585  signal recognition particle-docking protein FtsY [KO:K03110]
BRX40_19075  Sec-independent protein translocase TatA [KO:K03116]
BRX40_19070  twin arginine-targeting protein translocase TatB [KO:K03117]
BRX40_19065  twin arginine-targeting protein translocase TatC [KO:K03118]
BRX40_02525  signal peptidase I [KO:K03100] [EC:3.4.21.89]
BRX40_02840  signal peptidase I [KO:K03100] [EC:3.4.21.89]
BRX40_01240  signal peptidase II [KO:K03101] [EC:3.4.23.36]
Reference
  Authors
Dalbey RE, Robinson C.
  Title
Protein translocation into and across the bacterial plasma membrane and the plant thylakoid membrane.
  Journal
Trends Biochem Sci 24:17-22 (1999)
DOI:10.1016/S0968-0004(98)01333-4
Reference
  Authors
Berks BC, Sargent F, Palmer T.
  Title
The Tat protein export pathway.
  Journal
Mol Microbiol 35:260-74 (2000)
DOI:10.1046/j.1365-2958.2000.01719.x
Reference
  Authors
Wexler M, Sargent F, Jack RL, Stanley NR, Bogsch EG, Robinson C, Berks BC, Palmer T.
  Title
TatD is a cytoplasmic protein with DNase activity. No requirement for TatD family proteins in sec-independent protein export.
  Journal
J Biol Chem 275:16717-22 (2000)
DOI:10.1074/jbc.M000800200
Reference
  Authors
Jongbloed JD, Martin U, Antelmann H, Hecker M, Tjalsma H, Venema G, Bron S, van Dijl JM, Muller J.
  Title
TatC is a specificity determinant for protein secretion via the twin-arginine translocation pathway.
  Journal
J Biol Chem 275:41350-7 (2000)
DOI:10.1074/jbc.M004887200
Reference
  Authors
Rapoport TA
  Title
Protein translocation across the eukaryotic endoplasmic reticulum and bacterial plasma membranes.
  Journal
Nature 450:663-9 (2007)
DOI:10.1038/nature06384
Reference
  Authors
Flower AM
  Title
The SecY translocation complex: convergence of genetics and structure.
  Journal
Trends Microbiol 15:203-10 (2007)
DOI:10.1016/j.tim.2007.03.001
Reference
  Authors
Osborne AR, Rapoport TA, van den Berg B
  Title
Protein translocation by the Sec61/SecY channel.
  Journal
Annu Rev Cell Dev Biol 21:529-50 (2005)
DOI:10.1146/annurev.cellbio.21.012704.133214
Reference
  Authors
Paetzel M, Karla A, Strynadka NC, Dalbey RE
  Title
Signal peptidases.
  Journal
Chem Rev 102:4549-80 (2002)
DOI:10.1021/cr010166y
Reference
  Authors
Paetzel M, Dalbey RE, Strynadka NC
  Title
The structure and mechanism of bacterial type I signal peptidases. A novel antibiotic target.
  Journal
Pharmacol Ther 87:27-49 (2000)
DOI:10.1016/S0163-7258(00)00064-4
Reference
  Authors
Ng SY, Chaban B, VanDyke DJ, Jarrell KF
  Title
Archaeal signal peptidases.
  Journal
Microbiology 153:305-14 (2007)
DOI:10.1099/mic.0.2006/003087-0
Reference
  Authors
Desvaux M, Hebraud M, Talon R, Henderson IR
  Title
Secretion and subcellular localizations of bacterial proteins: a semantic awareness issue.
  Journal
Trends Microbiol 17:139-45 (2009)
DOI:10.1016/j.tim.2009.01.004
Reference
  Authors
Nakatogawa H, Murakami A, Ito K
  Title
Control of SecA and SecM translation by protein secretion.
  Journal
Curr Opin Microbiol 7:145-50 (2004)
DOI:10.1016/j.mib.2004.01.001
KO pathway
ko03060   
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