PATHWAY: sof01100 Help Entry sof01100                    Pathway                                 Name Metabolic pathways - Serratia odorifera Class BRITE hierarchy Pathway map sof01100   Metabolic pathways Module sof_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:sof01100] sof_M00002   Glycolysis, core module involving three-carbon compounds [PATH:sof01100] sof_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sof01100] sof_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:sof01100] sof_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:sof01100] sof_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:sof01100] sof_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:sof01100] sof_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:sof01100] sof_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:sof01100] sof_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sof01100] sof_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sof01100] sof_M00012   Glyoxylate cycle [PATH:sof01100] sof_M00015   Proline biosynthesis, glutamate => proline [PATH:sof01100] sof_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:sof01100] sof_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:sof01100] sof_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:sof01100] sof_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:sof01100] sof_M00021   Cysteine biosynthesis, serine => cysteine [PATH:sof01100] sof_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:sof01100] sof_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:sof01100] sof_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:sof01100] sof_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:sof01100] sof_M00026   Histidine biosynthesis, PRPP => histidine [PATH:sof01100] sof_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:sof01100] sof_M00034   Methionine salvage pathway [PATH:sof01100] sof_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:sof01100] sof_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:sof01100] sof_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:sof01100] sof_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:sof01100] sof_M00051   De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:sof01100] sof_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:sof01100] sof_M00060   KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:sof01100] sof_M00061   D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:sof01100] sof_M00063   CMP-KDO biosynthesis [PATH:sof01100] sof_M00064   ADP-L-glycero-D-manno-heptose biosynthesis [PATH:sof01100] sof_M00082   Fatty acid biosynthesis, initiation [PATH:sof01100] sof_M00083   Fatty acid biosynthesis, elongation [PATH:sof01100] sof_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:sof01100] sof_M00087   beta-Oxidation [PATH:sof01100] sof_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:sof01100] sof_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:sof01100] sof_M00116   Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:sof01100] sof_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:sof01100] sof_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:sof01100] sof_M00119   Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:sof01100] sof_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:sof01100] sof_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:sof01100] sof_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:sof01100] sof_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:sof01100] sof_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:sof01100] sof_M00133   Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:sof01100] sof_M00136   GABA biosynthesis, prokaryotes, putrescine => GABA [PATH:sof01100] sof_M00149   Succinate dehydrogenase, prokaryotes [PATH:sof01100] sof_M00150   Fumarate reductase, prokaryotes [PATH:sof01100] sof_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:sof01100] sof_M00168   CAM (Crassulacean acid metabolism), dark [PATH:sof01100] sof_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:sof01100] sof_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sof01100] sof_M00338   Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:sof01100] sof_M00417   Cytochrome o ubiquinol oxidase [PATH:sof01100] sof_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:sof01100] sof_M00530   Dissimilatory nitrate reduction, nitrate => ammonia [PATH:sof01100] sof_M00531   Assimilatory nitrate reduction, nitrate => ammonia [PATH:sof01100] sof_M00533   Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate [PATH:sof01100] sof_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:sof01100] sof_M00552   D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:sof01100] sof_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:sof01100] sof_M00555   Betaine biosynthesis, choline => betaine [PATH:sof01100] sof_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:sof01100] sof_M00572   Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:sof01100] sof_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:sof01100] sof_M00621   Glycine cleavage system [PATH:sof01100] sof_M00622   Nicotinate degradation, nicotinate => fumarate [PATH:sof01100] sof_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:sof01100] sof_M00761   Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:sof01100] sof_M00844   Arginine biosynthesis, ornithine => arginine [PATH:sof01100] sof_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:sof01100] sof_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:sof01100] sof_M00855   Glycogen degradation, glycogen => glucose-6P [PATH:sof01100] sof_M00879   Arginine succinyltransferase pathway, arginine => glutamate [PATH:sof01100] sof_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:sof01100] sof_M00899   Thiamine salvage pathway, HMP/HET => TMP [PATH:sof01100] sof_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:sof01100] sof_M00918   Aerobactin biosynthesis, lysine => aerobactin [PATH:sof01100] sof_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:sof01100] sof_M00970   Proline degradation, proline => glutamate [PATH:sof01100] Organism Serratia odorifera [GN:sof] Related pathway sof00010   Glycolysis / Gluconeogenesis sof00020   Citrate cycle (TCA cycle) sof00030   Pentose phosphate pathway sof00040   Pentose and glucuronate interconversions sof00051   Fructose and mannose metabolism sof00052   Galactose metabolism sof00053   Ascorbate and aldarate metabolism sof00061   Fatty acid biosynthesis sof00071   Fatty acid degradation sof00130   Ubiquinone and other terpenoid-quinone biosynthesis sof00190   Oxidative phosphorylation sof00220   Arginine biosynthesis sof00230   Purine metabolism sof00240   Pyrimidine metabolism sof00250   Alanine, aspartate and glutamate metabolism sof00260   Glycine, serine and threonine metabolism sof00261   Monobactam biosynthesis sof00270   Cysteine and methionine metabolism sof00280   Valine, leucine and isoleucine degradation sof00290   Valine, leucine and isoleucine biosynthesis sof00300   Lysine biosynthesis sof00310   Lysine degradation sof00330   Arginine and proline metabolism sof00332   Carbapenem biosynthesis sof00340   Histidine metabolism sof00350   Tyrosine metabolism sof00360   Phenylalanine metabolism sof00361   Chlorocyclohexane and chlorobenzene degradation sof00362   Benzoate degradation sof00364   Fluorobenzoate degradation sof00380   Tryptophan metabolism sof00400   Phenylalanine, tyrosine and tryptophan biosynthesis sof00401   Novobiocin biosynthesis sof00410   beta-Alanine metabolism sof00430   Taurine and hypotaurine metabolism sof00440   Phosphonate and phosphinate metabolism sof00450   Selenocompound metabolism sof00460   Cyanoamino acid metabolism sof00470   D-Amino acid metabolism sof00480   Glutathione metabolism sof00500   Starch and sucrose metabolism sof00511   Other glycan degradation sof00520   Amino sugar and nucleotide sugar metabolism sof00521   Streptomycin biosynthesis sof00523   Polyketide sugar unit biosynthesis sof00525   Acarbose and validamycin biosynthesis sof00540   Lipopolysaccharide biosynthesis sof00541   O-Antigen nucleotide sugar biosynthesis sof00542   O-Antigen repeat unit biosynthesis sof00543   Exopolysaccharide biosynthesis sof00550   Peptidoglycan biosynthesis sof00552   Teichoic acid biosynthesis sof00561   Glycerolipid metabolism sof00562   Inositol phosphate metabolism sof00564   Glycerophospholipid metabolism sof00565   Ether lipid metabolism sof00592   alpha-Linolenic acid metabolism sof00600   Sphingolipid metabolism sof00620   Pyruvate metabolism sof00622   Xylene degradation sof00623   Toluene degradation sof00625   Chloroalkane and chloroalkene degradation sof00626   Naphthalene degradation sof00627   Aminobenzoate degradation sof00630   Glyoxylate and dicarboxylate metabolism sof00633   Nitrotoluene degradation sof00640   Propanoate metabolism sof00650   Butanoate metabolism sof00660   C5-Branched dibasic acid metabolism sof00670   One carbon pool by folate sof00680   Methane metabolism sof00730   Thiamine metabolism sof00740   Riboflavin metabolism sof00750   Vitamin B6 metabolism sof00760   Nicotinate and nicotinamide metabolism sof00770   Pantothenate and CoA biosynthesis sof00780   Biotin metabolism sof00785   Lipoic acid metabolism sof00790   Folate biosynthesis sof00860   Porphyrin metabolism sof00900   Terpenoid backbone biosynthesis sof00903   Limonene degradation sof00906   Carotenoid biosynthesis sof00907   Pinene, camphor and geraniol degradation sof00910   Nitrogen metabolism sof00920   Sulfur metabolism sof00930   Caprolactam degradation sof00946   Degradation of flavonoids sof00997   Biosynthesis of various other secondary metabolites sof00999   Biosynthesis of various plant secondary metabolites sof01040   Biosynthesis of unsaturated fatty acids sof01053   Biosynthesis of siderophore group nonribosomal peptides KO pathway ko01100     LinkDB All DBs

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