KEGG   PATHWAY: thz00020
Entry
thz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thermotoga sp. Cell2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
thz00020  Citrate cycle (TCA cycle)
thz00020

Module
thz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:thz00020]
Other DBs
GO: 0006099
Organism
Thermotoga sp. Cell2 [GN:thz]
Gene
CELL2_03305  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
CELL2_08340  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CELL2_02810  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CELL2_05430  2-ketoisovalerate ferredoxin reductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CELL2_00260  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CELL2_05425  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CELL2_08245  2-oxoacid ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CELL2_02720  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CELL2_05420  Pyruvate/ketoisovalerate oxidoreductase [KO:K00177] [EC:1.2.7.3]
CELL2_02715  Pyruvate/ketoisovalerate oxidoreductase [KO:K00177] [EC:1.2.7.3]
CELL2_05435  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00176] [EC:1.2.7.3]
CELL2_00255  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00176] [EC:1.2.7.3]
CELL2_02065  tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit [KO:K01677] [EC:4.2.1.2]
CELL2_02060  tartrate/fumarate subfamily Fe-S type hydro-lyase subunit beta [KO:K01678] [EC:4.2.1.2]
CELL2_04705  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
CELL2_04700  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
CELL2_04715  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
CELL2_04710  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
thz00010  Glycolysis / Gluconeogenesis
thz00053  Ascorbate and aldarate metabolism
thz00061  Fatty acid biosynthesis
thz00071  Fatty acid degradation
thz00190  Oxidative phosphorylation
thz00220  Arginine biosynthesis
thz00250  Alanine, aspartate and glutamate metabolism
thz00280  Valine, leucine and isoleucine degradation
thz00350  Tyrosine metabolism
thz00470  D-Amino acid metabolism
thz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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