KEGG   PATHWAY: tiz00020
Entry
tiz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Tissierella sp. MB52-C2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tiz00020  Citrate cycle (TCA cycle)
tiz00020

Module
tiz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tiz00020]
tiz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tiz00020]
tiz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tiz00020]
Other DBs
GO: 0006099
Organism
Tissierella sp. MB52-C2 [GN:tiz]
Gene
RBU61_04350  2-isopropylmalate synthase [KO:K05942] [EC:2.3.3.3]
RBU61_04355  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
RBU61_04360  isocitrate/isopropylmalate dehydrogenase family protein [KO:K00030] [EC:1.1.1.41]
RBU61_02790  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RBU61_00530  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RBU61_01620  NAD(P)/FAD-dependent oxidoreductase [KO:K00382] [EC:1.8.1.4]
RBU61_03075  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
RBU61_07435  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
RBU61_15760  vorB; 3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
RBU61_03080  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
RBU61_07440  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
RBU61_03085  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
RBU61_15750  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
RBU61_07445  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
RBU61_03070  4Fe-4S binding protein [KO:K00176] [EC:1.2.7.3]
RBU61_07430  4Fe-4S binding protein [KO:K00176] [EC:1.2.7.3]
RBU61_03825  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
RBU61_03820  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
RBU61_14825  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
RBU61_14830  fumarate hydratase C-terminal domain-containing protein [KO:K01678] [EC:4.2.1.2]
RBU61_04365  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
RBU61_04915  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
RBU61_00545  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
RBU61_00540  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
RBU61_00535  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
RBU61_04635  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tiz00010  Glycolysis / Gluconeogenesis
tiz00053  Ascorbate and aldarate metabolism
tiz00061  Fatty acid biosynthesis
tiz00071  Fatty acid degradation
tiz00190  Oxidative phosphorylation
tiz00220  Arginine biosynthesis
tiz00250  Alanine, aspartate and glutamate metabolism
tiz00280  Valine, leucine and isoleucine degradation
tiz00350  Tyrosine metabolism
tiz00470  D-Amino acid metabolism
tiz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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