KEGG   PATHWAY: tmb00020
Entry
tmb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thioflavicoccus mobilis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tmb00020  Citrate cycle (TCA cycle)
tmb00020

Module
tmb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tmb00020]
tmb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tmb00020]
tmb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tmb00020]
tmb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tmb00020]
tmb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tmb00020]
Other DBs
GO: 0006099
Organism
Thioflavicoccus mobilis [GN:tmb]
Gene
Thimo_0081  citrate synthase I, hexameric type [KO:K01647] [EC:2.3.3.1]
Thimo_2678  2-methylcitrate synthase/citrate synthase II [KO:K01659] [EC:2.3.3.5]
Thimo_1469  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
Thimo_0244  isocitrate dehydrogenase, NADP-dependent, monomeric type [KO:K00031] [EC:1.1.1.42]
Thimo_0680  2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
Thimo_0681  2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Thimo_1085  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Thimo_0250  2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Thimo_0251  2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Thimo_0252  2-oxoacid:ferredoxin oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
Thimo_0249  NADH:ubiquinone oxidoreductase chain I-like protein [KO:K00176] [EC:1.2.7.3]
Thimo_0242  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Thimo_0241  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Thimo_0466  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Thimo_0467  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Thimo_0464  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
Thimo_0465  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
Thimo_2830  hydro-lyase, Fe-S type, tartrate/fumarate subfamily,hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily [KO:K01676] [EC:4.2.1.2]
Thimo_1235  fumarase [KO:K01679] [EC:4.2.1.2]
Thimo_0239  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Thimo_1967  acetyl/propionyl-CoA carboxylase, alpha subunit [KO:K01959] [EC:6.4.1.1]
Thimo_1968  oxaloacetate decarboxylase alpha subunit [KO:K01960] [EC:6.4.1.1]
Thimo_2282  ATP-dependent phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Thimo_1087  pyruvate dehydrogenase E1 component, homodimeric type [KO:K00163] [EC:1.2.4.1]
Thimo_1086  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form [KO:K00627] [EC:2.3.1.12]
Thimo_1404  pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tmb00010  Glycolysis / Gluconeogenesis
tmb00053  Ascorbate and aldarate metabolism
tmb00061  Fatty acid biosynthesis
tmb00071  Fatty acid degradation
tmb00190  Oxidative phosphorylation
tmb00220  Arginine biosynthesis
tmb00250  Alanine, aspartate and glutamate metabolism
tmb00280  Valine, leucine and isoleucine degradation
tmb00350  Tyrosine metabolism
tmb00470  D-Amino acid metabolism
tmb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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